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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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using concoct on isolate sequencing samples #313

Open franciscozorrilla opened 2 years ago

franciscozorrilla commented 2 years ago

I was wondering if you are aware of any usage of CONCOCT for isolate sequencing samples? Could this be a potential method for identifying plasmids?

alneberg commented 2 years ago

Hello! This is probably best answered by @andand?

andand commented 2 years ago

Hi, I am not aware of this, but it may work since both copy numbers and nucleotide composition may differ between plasmids and the rest of the genome. Give it a try! Cheers Anders

On Thu, Apr 21, 2022 at 10:29 AM Johannes Alneberg @.***> wrote:

Hello! This is probably best answered by @andand https://github.com/andand?

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