Open bebatut opened 1 year ago
Hi,
When I try to run CONCOCT on one of my sample (work on a 2nd one), it failed with Failed Cholesky decomposition in decomposeMatrix. I do not understand the error, what could cause it and how to fix it. Any idea how to debug?
Failed Cholesky decomposition in decomposeMatrix
Thanks
Bérénice
Command:
$ concoct --coverage_file 'coverage' --composition_file 'composition.fa' --clusters 400 --kmer_length 4 --threads 48 --length_threshold 1000 --read_length 100 --total_percentage_pca 100 --basename 'outdir/' --seed 1 --iterations 500 --no_original_data
with
coverage
concoct_coverage_table.py
composition.fa
cut_up_fasta.py
Hi,
When I try to run CONCOCT on one of my sample (work on a 2nd one), it failed with
Failed Cholesky decomposition in decomposeMatrix. I do not understand the error, what could cause it and how to fix it. Any idea how to debug?Thanks
Bérénice
Details
Command:
with
coveragegenerated usingconcoct_coverage_table.py(default values)composition.fagenerated usingcut_up_fasta.py(default values)