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BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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TypeError: write() argument must be str, not bytes #320

Closed arijitnus closed 1 year ago

arijitnus commented 1 year ago

Hi @alneberg and concoct community I am facing the following error, when trying to run concoct with multiple files. Howevere, with a single file, it does not generate any error. Could you help or provide any guidance?

Traceback (most recent call last): File "/home/svu/e0512807/miniconda3/envs/concoct_env/bin/concoct_coverage_table.py", line 91, in generate_input_table(args.bedfile, args.bamfiles, samplenames=samplenames) File "/home/svu/e0512807/miniconda3/envs/concoct_env/bin/concoct_coverage_table.py", line 41, in generate_input_table sys.stderr.write(out) TypeError: write() argument must be str, not bytes

arijitnus commented 1 year ago

Suddenly, reinstalling concoct in a new conda environment using Anaconda seemed to solve the problem.