BinPro / CONCOCT

Clustering cONtigs with COverage and ComposiTion
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conda CONCOCT v1.1.0 recipe update for osx? #327

Open franciscozorrilla opened 1 year ago

franciscozorrilla commented 1 year ago

Hi Johannes,

I have been trying to make metaGEM installable from conda on osx ARM machines (e.g. https://github.com/franciscozorrilla/metaGEM/issues/134, https://github.com/franciscozorrilla/metaGEM/issues/122). However it appears that the CONCOCT conda recipe available for osx is only v0.4.2 and not v1.1.0, which makes the metaGEM recipe fail when trying to install on osx ARM machines:

$ mamba create -n metagem -c bioconda metagem

                  __    __    __    __
                 /  \  /  \  /  \  /  \
                /    \/    \/    \/    \
███████████████/  /██/  /██/  /██/  /████████████████████████
              /  / \   / \   / \   / \  \____
             /  /   \_/   \_/   \_/   \    o \__,
            / _/                       \_____/  `
            |/
        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗
        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║
        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║
        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝

        mamba (0.19.0) supported by @QuantStack

        GitHub:  https://github.com/mamba-org/mamba
        Twitter: https://twitter.com/QuantStack

█████████████████████████████████████████████████████████████

Looking for: ['metagem']

bioconda/noarch          [====================] (00m:01s) Done
bioconda/osx-64          [====================] (00m:01s) Done
pkgs/r/noarch            [====================] (00m:00s) No change
pkgs/main/osx-64         [====================] (00m:01s) Done
pkgs/r/osx-64            [====================] (00m:00s) No change
pkgs/main/noarch         [====================] (00m:00s) Done
conda-forge/noarch       [====================] (00m:03s) Done
conda-forge/osx-64       [====================] (00m:08s) Done
Encountered problems while solving:
  - nothing provides concoct >=1.1.0 needed by metagem-1.0.5-hdfd78af_0

Would it be possible/straightforward for you to update the CONCOCT conda recipe for osx to v.1.1.0?

Best, Francisco