I installed concoct with conda and faced the OpenBLAS problem.
Reinstalled it using these instructions.
Then there was TypeError: Feature names are... error.
Rectified it by installing scikit-learn 1.1.0 as per this post.
It worked. I am able to use multiple threads. However, even though I gave -t 24 it started using all the available threads. Where am I doing wrong...?
Up and running. Check /data/cmi_admin/anwesh/SG_Meta/CInd_Gut/concoct_out/MN108/sub_contigs/log.txt for progress
/apps/codes/mambaforge/envs/concoct/lib/python3.8/site-packages/sklearn/utils/validation.py:1854: FutureWarning: Feature names only support names that are all strings. Got feature names with dtypes: ['int', 'str']. An error will be raised in 1.2.
warnings.warn(
/apps/codes/mambaforge/envs/concoct/lib/python3.8/site-packages/sklearn/utils/validation.py:1854: FutureWarning: Feature names only support names that are all strings. Got feature names with dtypes: ['int', 'str']. An error will be raised in 1.2.
warnings.warn(
83062 2596 24
Setting 24 OMP threads
Generate input data
0,-3355428.135938,64970.038361
Hi all,
I installed
concoct
with conda and faced the OpenBLAS problem. Reinstalled it using these instructions. Then there wasTypeError: Feature names are...
error. Rectified it by installingscikit-learn 1.1.0
as per this post. It worked. I am able to use multiple threads. However, even though I gave-t 24
it started using all the available threads. Where am I doing wrong...?Command used...
Initial output in the terminal...
Actual CPU usage...![Screenshot from 2023-10-05 18-22-27](https://github.com/BinPro/CONCOCT/assets/15630299/7f26108b-36b7-45ec-acd7-594320a29e78)