snapgene-viewer: Add package

[Kiri2002]

Involved packages

• snapgene-viewer

Involved issue

Add package

Close #

Details

• [x] Tested in the local machine (largest 16G RAM) and it is passed without any issue
• [x] Provide New Package
• [ ] Fix the Packages
  • [ ] PKGBUILD
  • [ ] lilac.yaml
  • [ ] lilac.py
• [x] Would like to continue to work with us

Additional Note

tested in extra-x86_64:

snapgene-viewer

• snapgene-viewer-7.2.0-1-x86_64-package.log
• snapgene-viewer-7.2.0-1-x86_64.pkg.tar.zst-namcap.log

The ELF error caused by upstream can't be fixed. This is a close source software like mega.

[Kiri2002]

The original .so files and snapgene(bin) has wrong rpath forward to "/home/centos", example:

snapgene E: Insecure RPATH '/home/centos/.conan/data/qt-for-sg/6.2.10/snapgene/stable/package/f6a1919c5d86e9463ebddc2f3d4066e8e92eadce/lib' in file ('opt/gslbiotech/snapgene/libqntp.so.1.0.0')
snapgene E: Insecure RPATH '/home/centos/.conan/data/qt-for-sg/6.2.10/snapgene/stable/package/f6a1919c5d86e9463ebddc2f3d4066e8e92eadce/lib' in file ('opt/gslbiotech/snapgene/libqwebdavlib.so.1.0.0')

So I use "patchelf" to fix it.

[starsareintherose]

why it creates centos home dir?

[starsareintherose]

@hubutui @lilydjwg @pekkarr would you like to give a review for this pr

[Kiri2002]

The "rpath" mean "run path", is parameter for .so or executable bin etc. It will try to access to "rpath" to find libs when run.

why it creates centos home dir?

It not create any dir. And why some file have wrong rpath, the upstream should be blamed who built it in wrong way.

how about creating a install file?

I searched in Archlinuxcn, and don't find any example to fix rpah in install/patch file. But in PKGBUILD.

https://github.com/search?q=repo%3Aarchlinuxcn%2Frepo%20patchelf&type=code

[Kiri2002]

@starsareintherose There are more information about "rpath": https://en.wikipedia.org/wiki/Rpath https://bugs.archlinux.org/task/14049

[starsareintherose]

If @lilydjwg agree, we are delighted to merge it

[hubutui]

Is this pkg free software? Could we redistribute it?

[starsareintherose]

It seems that this pkg is commercial one.

[Kiri2002]

Just like mega

[starsareintherose]

@hubutui but it's a bit different from mega, mega is free of charge, snapgene needs payment

[Kiri2002]

Both them can download without money. But snapgene need license(can try for free for some days). While snapgene-viewer need no payment.

[Kiri2002]

Should the ms-font be added to opt-depends? It use system font now, and work fine

[Kiri2002]

sorry for forget upload *.sh. Added now

[hubutui]

could you check the source again?

 updpkgsums
==> Retrieving sources...
  -> Downloading snapgene_7.2.0_linux.rpm...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (56) The requested URL returned error: 404
==> ERROR: Failure while downloading https://cdn.snapgene.com/downloads/SnapGene/7.x/2/7.2.0/snapgene_7.2.0_linux.rpm
    Aborting...
==> ERROR: Failed to generate new checksums

==> Retrieving sources...
  -> Downloading snapgene_viewer_7.2.0_linux.rpm...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (56) The requested URL returned error: 404
==> ERROR: Failure while downloading https://cdn.snapgene.com/downloads/SnapGeneViewer/7.x/2/7.2.0/snapgene_viewer_7.2.0_linux.rpm
    Aborting...
==> ERROR: Failed to generate new checksums

[hubutui]

you can follow this wiki to build this pkg in a clean chroot.

[Kiri2002]

could you check the source again?

 updpkgsums
==> Retrieving sources...
  -> Downloading snapgene_7.2.0_linux.rpm...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (56) The requested URL returned error: 404
==> ERROR: Failure while downloading https://cdn.snapgene.com/downloads/SnapGene/7.x/2/7.2.0/snapgene_7.2.0_linux.rpm
    Aborting...
==> ERROR: Failed to generate new checksums

==> Retrieving sources...
  -> Downloading snapgene_viewer_7.2.0_linux.rpm...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
curl: (56) The requested URL returned error: 404
==> ERROR: Failure while downloading https://cdn.snapgene.com/downloads/SnapGeneViewer/7.x/2/7.2.0/snapgene_viewer_7.2.0_linux.rpm
    Aborting...
==> ERROR: Failed to generate new checksums

this issue cause by this:

now fixed.

[starsareintherose]

Should the ms-font be added to opt-depends? It use system font now, and work fine

It doesn't make sense, some commercial software is free to use, but they don't want us to re-distribute it

[Kiri2002]

Should the ms-font be added to opt-depends? It use system font now, and work fine

It doesn't make sense, some commercial software is free to use, but they don't want us to re-distribute it

Maybe just do it, remove when the vendor ask us to do.

[starsareintherose]

@hubutui final check, then you can squash and merge

[starsareintherose]

Final decision: only snapegene-viewer can be merged

[Kiri2002]

Final decision: only snapegene-viewer can be merged

snapgene separated to https://github.com/BioArchLinux/Packages/pull/204, for maybe something changed in the future.