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BioContainers / biocontainers-backend

Python backend for Biocontainers (Flask + MongoDB)
http://biocontainers.pro
Apache License 2.0
3 stars 1 forks source link

Error indexing quayio #6

Closed ypriverol closed 5 years ago

ypriverol commented 5 years ago 
INFO:biocontainers.quayio.models: A full description has been retrieved from Quay.io for this container -- rsa
Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/ratelimit/decorators.py", line 112, in wrapper
    return func(*args, **kargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/ratelimit/decorators.py", line 77, in wrapper
    raise RateLimitException('too many calls', period_remaining)
ratelimit.exception.RateLimitException: too many calls

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connection.py", line 159, in _new_conn
    (self._dns_host, self.port), self.timeout, **extra_kw)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/util/connection.py", line 57, in create_connection
    for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/socket.py", line 530, in getaddrinfo
    for res in _socket.getaddrinfo(host, port, family, type, proto, flags):
socket.gaierror: [Errno 8] nodename nor servname provided, or not known

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connectionpool.py", line 600, in urlopen
    chunked=chunked)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connectionpool.py", line 343, in _make_request
    self._validate_conn(conn)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connectionpool.py", line 839, in _validate_conn
    conn.connect()
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connection.py", line 301, in connect
    conn = self._new_conn()
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connection.py", line 168, in _new_conn
    self, "Failed to establish a new connection: %s" % e)
urllib3.exceptions.NewConnectionError: <urllib3.connection.VerifiedHTTPSConnection object at 0x1112e4ef0>: Failed to establish a new connection: [Errno 8] nodename nor servname provided, or not known

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/adapters.py", line 449, in send
    timeout=timeout
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/connectionpool.py", line 638, in urlopen
    _stacktrace=sys.exc_info()[2])
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/urllib3/util/retry.py", line 398, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='quay.io', port=443): Max retries exceeded with url: /api/v1/repository/biocontainers/r-sartools (Caused by NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x1112e4ef0>: Failed to establish a new connection: [Errno 8] nodename nor servname provided, or not known',))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "biocontainers/pipelines.py", line 123, in <module>
    main()
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "biocontainers/pipelines.py", line 116, in main
    import_quayio_containers(config, config_profile)
  File "biocontainers/pipelines.py", line 42, in import_quayio_containers
    quayio_containers = reader.get_containers()
  File "/Users/yperez/IdeaProjects/github-repo/biodocker/biocontainers-backend/biocontainers/quayio/models.py", line 106, in get_containers
    response = call_api(url)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/ratelimit/decorators.py", line 115, in wrapper
    return func(*args, **kargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/ratelimit/decorators.py", line 80, in wrapper
    return func(*args, **kargs)
  File "/Users/yperez/IdeaProjects/github-repo/biodocker/biocontainers-backend/biocontainers/common/utils.py", line 10, in call_api
    response = requests.get(url)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/api.py", line 60, in request
    return session.request(method=method, url=url, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/sessions.py", line 533, in request
    resp = self.send(prep, **send_kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/sessions.py", line 646, in send
    r = adapter.send(request, **kwargs)
  File "/Library/Frameworks/Python.framework/Versions/3.4/lib/python3.4/site-packages/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='quay.io', port=443): Max retries exceeded with url: /api/v1/repository/biocontainers/r-sartools (Caused by NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object at 0x1112e4ef0>: Failed to establish a new connection: [Errno 8] nodename nor servname provided, or not known',)
ypriverol commented 5 years ago

the pipeline is working fine. Only one small error with when the computer is idle.