Closed ypriverol closed 5 years ago
We have some multitools containers with the following name pattern:
mulled*
These are containers that contains multiple tools. The name of the tools inside the containers can be found here https://github.com/BioContainers/multi-package-containers.
We need a new pipeline that perform the following operations:
[ ] Go to Github https://github.com/BioContainers/multi-package-containers/tree/master/combinations read all the files started with mulled prefrix.
[ ] Check if the mulled package with that name exist into our mongoDB database.
[ ] If the mulled package is there, annotated the tool and the version tool that is contains the following corrsponding tools in the mulled recipe for example:
https://github.com/BioContainers/multi-package-containers/blob/master/combinations/mulled-v2-01faa1938d8e492ca7fa7c64f8bff8f1cf12b007:4b6db5285a1b66d84116279530179092d95654e0-0.tsv r-scales=0.5.0,bioconductor-cardinal=1.12.1,r-kernsmooth=2.23_15,r-ggplot2=2.2.1,r-pheatmap=1.0.8,r-gridextra=2.2.1,r-rcolorbrewer=1.1_2
https://github.com/BioContainers/multi-package-containers/blob/master/combinations/mulled-v2-01faa1938d8e492ca7fa7c64f8bff8f1cf12b007:4b6db5285a1b66d84116279530179092d95654e0-0.tsv
r-scales=0.5.0,bioconductor-cardinal=1.12.1,r-kernsmooth=2.23_15,r-ggplot2=2.2.1,r-pheatmap=1.0.8,r-gridextra=2.2.1,r-rcolorbrewer=1.1_2
We have some multitools containers with the following name pattern:
mulled*
These are containers that contains multiple tools. The name of the tools inside the containers can be found here https://github.com/BioContainers/multi-package-containers.
We need a new pipeline that perform the following operations:
[ ] Go to Github https://github.com/BioContainers/multi-package-containers/tree/master/combinations read all the files started with mulled prefrix.
[ ] Check if the mulled package with that name exist into our mongoDB database.
[ ] If the mulled package is there, annotated the tool and the version tool that is contains the following corrsponding tools in the mulled recipe for example: