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Bioinformatics containers
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update Patchwork from v0.5.2 to v0.5.5 #538

Open fethalen opened 10 months ago

fethalen commented 10 months ago

I've submitted an update to the Dockerfile for Patchwork. Patchwork was updated to be compatible with newer versions of Julia and to ease up the compilation step. The Dockerfile was also tweaked to make it compatible with Apptainer/Singularity for users running HPC systems.

Two others versions of Patchwork have previously been submitted to Biocontainers.

biocontainers-bot commented 10 months ago

please specify in about.license_file the location of the license file in the container, or a url to license for this release of the software.

biocontainers-bot commented 10 months ago

Found a biotools entry matching the software name (https://bio.tools/Patchwork), if this is the same software, please add the extra.identifiers.biotools label to your Dockerfile

biocontainers-bot commented 10 months ago

No test-cmds.txt (test file) present, skipping tests

mboudet commented 10 months ago

Hi. You can skip the biotools part, since it's a different container, but it would be great to add the license (same as before, GPL-3.0 I think?)

Another issue is that you are building from the last commit on git, meaning the container build is not reproductible. This PR should probably wait for a new 'release', so that we can fix on a tag.