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BioInf-Wuerzburg
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proovread
PacBio hybrid error correction through iterative short read consensus
MIT License
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error while running bam2cns
#109
nam183
closed
6 years ago
3
bam2cns unexpectedly returned
#108
symcong
closed
6 years ago
1
ccseq: assume phred-offset 33 for read if guessing fails. Thanks to David Mathog
#107
thackl
closed
7 years ago
0
prevent proovread from skipping stubby reads
#106
SabLeCam
closed
7 years ago
2
FILE should be located at './bin/SeqChunker'
#105
yhsYhsYhs
closed
6 years ago
1
Estimating short read quality offset failed.
#104
yhsYhsYhs
closed
6 years ago
5
Run proovread locally for a plant genome
#103
PedroBarbosa
closed
6 years ago
3
SeqFilter error
#102
SabLeCam
closed
6 years ago
3
Error: bam2cns unexpectedly returned
#101
sean-la
closed
6 years ago
1
bam2cns
#100
rebzzy
closed
6 years ago
3
Conflicting BLAST installations?!
#99
eldariont
closed
6 years ago
1
Can siamaera be used for raw pacbio reads?
#98
danshu
closed
7 years ago
4
how to correct transcriptome PacBio reads better?
#97
jiezhou1
closed
7 years ago
3
EricDeveaud-master
#96
thackl
opened
7 years ago
1
Merge Franks travis fix
#95
thackl
closed
7 years ago
1
feature/makefile
#94
thackl
closed
7 years ago
2
feature/makefile
#93
thackl
closed
7 years ago
1
can't find ccseq-mKxJ3.fq.idx.log
#92
zhoujiebioinf
closed
7 years ago
2
BLAST engine error: Warning: Sequence contains no data, [siamaera] Blast exited with error: 768
#91
CelineReisser
closed
7 years ago
2
[error] "Quality trimming and siamaera filtering raw output" step
#90
migrau
closed
7 years ago
12
Proovread error on sample data
#89
laure182
closed
7 years ago
6
--no-sampling setting or not
#88
xinwang-bio
closed
7 years ago
2
How can I intelligent use proovread to correct Full-length (FL) transcripts
#87
nikou123456
closed
7 years ago
3
No sequences found matching given filter criteria
#86
xinwang-bio
closed
8 years ago
4
3 questions about proovread
#85
gengyuncong
closed
7 years ago
3
masking percentage less than 50
#84
MeHelmy
closed
6 years ago
6
Using proovread to remove errors from assembly
#83
ramadatta
closed
8 years ago
3
get error when run the sample data [proovread --sample --pre pr-sample]
#82
yplee614
closed
7 years ago
3
Is it possible to split the splitted read even more
#81
MeHelmy
closed
8 years ago
3
Proovread error at the correcting step
#80
Trevaly
closed
8 years ago
12
Proovread error
#79
Trevaly
closed
8 years ago
2
doc update and new faqs
#78
thackl
closed
8 years ago
2
doc update and new faqs
#77
thackl
closed
8 years ago
1
Read IDs don't look like proper PacBio subread IDs
#76
hermeseduardo
closed
8 years ago
2
How many Short reads can I need? And How can I get the the Chimera trimmed and no LQ trimmed sequence?
#75
52teth
closed
8 years ago
2
how to correct list of many long reads files for Proovread?
#74
wsuplantpathology
closed
8 years ago
4
SeqFilter issue: error:Fastq::Seq version v0.13.4 required--this is only version v0.13.3
#73
wsuplantpathology
closed
8 years ago
1
what does read quality offset mean?
#72
wsuplantpathology
closed
8 years ago
1
Proovread substring information may be incorrect
#71
sean-la
closed
8 years ago
4
Is proovread output guaranteed to be in the order given in the input FASTQ file?
#70
sean-la
closed
8 years ago
2
Identifying trimmed reads that arise from the same read and interpreting substring information
#69
sean-la
closed
8 years ago
2
Long read quality offset auto-detection failed
#68
sean-la
closed
8 years ago
2
bam2cns error: Odd number of elements in hash assignment at bam2cns line 67
#67
sean-la
closed
8 years ago
8
Running proovread on sample data yields empty trimmed reads file
#66
sean-la
closed
8 years ago
2
Hotfix/samtools 1.3.1
#65
thackl
closed
8 years ago
2
Log::Log4perl module
#64
donlantican
closed
8 years ago
3
Does it matter if I have too high coverage from the short reads?
#63
yfu
closed
8 years ago
2
change version->parse to version->declare to allow for correct compar…
#62
thackl
closed
8 years ago
1
'[main_samview] region "long_contamination_0:" specifies an unknown reference call name' error after PATH hotfix
#61
sean-la
closed
8 years ago
2
Can't exec "samtools": No such file or directory
#60
sean-la
closed
8 years ago
2
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