I am trying to extract viral information from metagenome, however, 95% of the assembled viral contigs were less than 10k, so I am thinking to map the short contigs(<10k) to the reference viral genome to get more long viral contigs, can I do this by bbmap.sh?
Hi,
I am trying to extract viral information from metagenome, however, 95% of the assembled viral contigs were less than 10k, so I am thinking to map the short contigs(<10k) to the reference viral genome to get more long viral contigs, can I do this by bbmap.sh?
Thank you!
Ning