Support 0.7 and drop 0.6

[bicycle1885]

Close #37.

• [x] Clean up code.

[codecov-io]

Codecov Report

Merging #39 into master will increase coverage by 1.02%. The diff coverage is 98.21%.

@@            Coverage Diff             @@
##           master      #39      +/-   ##
==========================================
+ Coverage      95%   96.02%   +1.02%     
==========================================
  Files          16       16              
  Lines        1300     1032     -268     
==========================================
- Hits         1235      991     -244     
+ Misses         65       41      -24

Impacted Files	Coverage Δ
src/memory.jl	100% <ø> (ø)	:arrow_up:
src/codegen.jl	94.89% <100%> (+2.7%)	:arrow_up:
src/sset.jl	100% <100%> (ø)	:arrow_up:
src/action.jl	96% <100%> (-0.43%)	:arrow_down:
src/sdict.jl	97.22% <100%> (+2.72%)	:arrow_up:
src/byteset.jl	85.96% <100%> (-2.04%)	:arrow_down:
src/traverser.jl	100% <100%> (ø)	:arrow_up:
src/dfa.jl	100% <100%> (+0.46%)	:arrow_up:
src/precond.jl	80% <100%> (-3.34%)	:arrow_down:
src/re.jl	94.83% <96.42%> (+0.29%)	:arrow_up:
... and 15 more

---

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[TransGirlCodes]

This looks like it works now, can we merge and cut a release today? That way I can update the other BioJulia packages that depend on Automa to 0.7 during the JuliaCon hackathon :)

[bicycle1885]

Sure. I'm going to run some benchmarks locally and then merge this change.

[TransGirlCodes]

Thanks! @bicycle1885, I really appreciate it! :) Wish you could be here, everyone is very nice!

[bicycle1885]

Wish you could be here

Really!

Okay, the benchmarks look good. I cut a release now.

Julia 0.7 (this branch)

Case 1 ([A-z]*\r?\n)*
PCRE:                 Trial(38.700 μs)
Automa.jl:            Trial(41.111 μs)
Automa.jl (unrolled): Trial(17.430 μs)

Case 2 ([A-Za-z]*\r?\n)*
PCRE:                 Trial(39.022 μs)
Automa.jl:            Trial(50.070 μs)
Automa.jl (unrolled): Trial(30.665 μs)

Case 3 ([ACGTacgt]*\r?\n)*
PCRE:                 Trial(81.432 μs)
Automa.jl:            Trial(50.072 μs)
Automa.jl (unrolled): Trial(30.220 μs)

Case 4 ([A-Za-z\*-]*\r?\n)*
PCRE:                 Trial(81.429 μs)
Automa.jl:            Trial(62.992 μs)
Automa.jl (unrolled): Trial(33.230 μs)

Julia 0.6 (master)

Case 1 ([A-z]*\r?\n)*
PCRE:                 Trial(45.761 μs)
Automa.jl:            Trial(36.564 μs)
Automa.jl (unrolled): Trial(18.959 μs)

Case 2 ([A-Za-z]*\r?\n)*
PCRE:                 Trial(39.018 μs)
Automa.jl:            Trial(41.272 μs)
Automa.jl (unrolled): Trial(42.628 μs)

Case 3 ([ACGTacgt]*\r?\n)*
PCRE:                 Trial(81.440 μs)
Automa.jl:            Trial(49.774 μs)
Automa.jl (unrolled): Trial(42.626 μs)

Case 4 ([A-Za-z\*-]*\r?\n)*
PCRE:                 Trial(81.431 μs)
Automa.jl:            Trial(62.390 μs)
Automa.jl (unrolled): Trial(34.760 μs)

[TransGirlCodes]

Wish you could be here

Really!

Absolutely, I really like meeting fellow Biology julia people in real life!

Thanks for the release!