Closed bicycle1885 closed 7 years ago
There are two options here, A). Fix the tests and fiddle with Bio.Align, or B). Go ahead and remove Bio.Align and replace with BioAlignments, which presumably will also make the CI failure go away.
I'm not sure why Bio.Align is related to the problem.
Test Summary: | Pass Error Total
PairwiseAlignment | 206 1 207
SubstitutionMatrix | 22 22
AffineGapScoreModel | 21 21
CostModel | 9 9
Alignment | 5 5
count_<ops> | 5 5
Interfaces | 8 8
GlobalAlignment | 55 55
SemiGlobalAlignment | 12 12
OverlapAlignment | 15 15
LocalAlignment | 18 1 19
zero matching score | 11 11
positive matching score | 7 1 8
complete match | 3 3
partial match | 3 1 4
no match | 1 1
EditDistance | 22 22
LevenshteinDistance | 2 2
HammingDistance | 12 12
Because the tests that are erroring are currently in Bio.Align. So we can either fix them, or go ahead with replacing Bio.Align with BioAlignments as planned, which makes the CI failure moot.
Is that due to https://github.com/BioJulia/Bio.jl/pull/468#issuecomment-310861132? If so, the easiest fix is just restoring whitespaces in tests.
Now restored by #482.
See https://github.com/BioJulia/Bio.jl/pull/468. I think we should make it work soon.