Closed weinstockj closed 7 years ago
Try using the latest release of GeneticVariation.jl - it contains the VCF parser from Bio.Var. GeneticVariation is the Bio.Var module in the new non-monolithic code organisation we are moving to.
Thanks - that worked!
I'm on Ubuntu 14.04, running Julia 0.5.2. I'm trying to use the Bio.Var module in the Bio.jl package.
Running
Pkg.clone("https://github.com/BioJulia/Bio.jl.git")
fails withThe error message includes a recommendation to run
Pkg.build("HttpParser")
, which fails with the same error message.I tried earlier to install Bio.jl on Julia 0.6.0, which failed due to PairwiseListMatrices not building.
I understand that I am not using the stable release here, but I am only interested in the VCF reader. Perhaps there's a workaround for using the Bio.Var module? My apologies if this is more of an HttpParser issue than a Bio.jl issue.