Closed yangli-ai closed 4 years ago
My Julia cannot work as Bio.jl tutorial:
julia> using Bio.Seq julia> seq = dna"ACAGCGTAGCT"; julia> search(seq, DNA_G) ERROR: UndefVarError: search not defined Stacktrace: [1] top-level scope at none:0
Here are tests for other functions:
julia> eachmatch eachmatch (generic function with 3 methods)
julia> matchall ERROR: UndefVarError: matchall not defined
julia> search ERROR: UndefVarError: search not defined
julia> approxsearch approxsearch (generic function with 6 methods)
'search' is removed in 0.7+.
Bio.jl is also a legacy package no longer actively developed. If you want sequences please head over to BioSequences.jl
My Julia cannot work as Bio.jl tutorial:
julia> using Bio.Seq julia> seq = dna"ACAGCGTAGCT"; julia> search(seq, DNA_G) ERROR: UndefVarError: search not defined Stacktrace: [1] top-level scope at none:0
Here are tests for other functions:
julia> eachmatch eachmatch (generic function with 3 methods)
julia> matchall ERROR: UndefVarError: matchall not defined
julia> search ERROR: UndefVarError: search not defined
julia> approxsearch approxsearch (generic function with 6 methods)