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BioJulia / Bio.jl

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
http://biojulia.dev
MIT License
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search function is undefined #496

Closed yangli-ai closed 4 years ago

yangli-ai commented 5 years ago

My Julia cannot work as Bio.jl tutorial:

julia> using Bio.Seq julia> seq = dna"ACAGCGTAGCT"; julia> search(seq, DNA_G) ERROR: UndefVarError: search not defined Stacktrace: [1] top-level scope at none:0

Here are tests for other functions:

julia> eachmatch eachmatch (generic function with 3 methods)

julia> matchall ERROR: UndefVarError: matchall not defined

julia> search ERROR: UndefVarError: search not defined

julia> approxsearch approxsearch (generic function with 6 methods)

pemryan commented 4 years ago

'search' is removed in 0.7+.

TransGirlCodes commented 4 years ago

Bio.jl is also a legacy package no longer actively developed. If you want sequences please head over to BioSequences.jl