I am trying to run 'using Biosequences' on Julia Version 1.4.1 on a Windows 10 PC.

[ManaseeTW]

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[jgreener64]

Did you follow the installation instructions here? https://biojulia.net/BioSequences.jl/stable/

[ManaseeTW]

Dear Joe, Thank you very much for your response.Yes I followed that installation. It works fine up to add BioSequences. Afterwards when julia> using BioSequences is run, I get the following output,

[ Info: Precompiling BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59]ERROR: LoadError: LoadError: OverflowError: binomial(59, 8) overflowsStacktrace: [1] binomial(::Int32, ::Int32) at .\intfuncs.jl:920 [2] #1 at .\none:0 [inlined] [3] iterate at .\generator.jl:47 [inlined] [4] collect_to! at .\array.jl:711 [inlined] [5] collect_to_with_first!(::Array{Int32,2}, ::Int32, ::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}, ::Tuple{Tuple{Int32,Int32},Tuple{Int32,Int32}}) at .\array.jl:689 [6] collect(::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}) at .\array.jl:670 [7] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397 [8] include(::Module, ::String) at .\Base.jl:377 [9] include(::String) at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:1 [10] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28 [11] include(::Module, ::String) at .\Base.jl:377 [12] top-level scope at none:2 [13] eval at .\boot.jl:331 [inlined] [14] eval(::Expr) at .\client.jl:449 [15] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28ERROR: LoadError: Failed to precompile IndexableBitVectors [1cb3b9ac-1ffd-5777-9e6b-a3d42300664d] to C:\Users\Manasee\.julia\compiled\v1.4\IndexableBitVectors\CFT4U_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922 [6] include(::Module, ::String) at .\Base.jl:377 [7] top-level scope at none:2 [8] eval at .\boot.jl:331 [inlined] [9] eval(::Expr) at .\client.jl:449 [10] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\BioSequences\01nDP\src\BioSequences.jl:256ERROR: Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to C:\Users\Manasee\.julia\compiled\v1.4\BioSequences\i7zyu_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922

I am quite new to Julia programming and I use Windows 10. I would be much thankful for any help regarding resolving this.Thanking you,Manasee

[jgreener64]

Would you mind putting the error trace in code blocks (```) and keeping the line breaks? That would make it easier to read.

Also, could you give the output of status after entering the package REPL mode?

[kescobo]

Wouldn't it make more sense to have this issue in BioSequences.jl repo, rather than Bio.jl?

[kescobo]

I tried editing the comment, because it came from e-mail, the markdown doesn't work. Also all the linebreaks seem to be removed :-/

[ManaseeTW]

Dear Joe,Thank you for taking time to trying to help me out. The status in REPL is shown as  Status `C:\Users\Manasee\.julia\environments\v1.4\Project.toml`  [7e6ae17a] BioSequences v2.0.1I am not sure what you exactly mean by entering the error trace in code blocks with line breaks because I am completely and utterly new to this programming stuff. I hope this is more helpful to you, which is the error I got when 'julia> using BioSequences' is run [ Info: Precompiling BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59]ERROR: LoadError: LoadError: OverflowError: binomial(59, 8) overflowsStacktrace: [1] binomial(::Int32, ::Int32) at .\intfuncs.jl:920 [2] #1 at .\none:0 [inlined] [3] iterate at .\generator.jl:47 [inlined] [4] collect_to! at .\array.jl:711 [inlined] [5] collect_to_with_first!(::Array{Int32,2}, ::Int32, ::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}, ::Tuple{Tuple{Int32,Int32},Tuple{Int32,Int32}}) at .\array.jl:689 [6] collect(::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}) at .\array.jl:670 [7] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397 [8] include(::Module, ::String) at .\Base.jl:377 [9] include(::String) at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:1 [10] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28 [11] include(::Module, ::String) at .\Base.jl:377 [12] top-level scope at none:2 [13] eval at .\boot.jl:331 [inlined] [14] eval(::Expr) at .\client.jl:449 [15] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28``````ERROR: LoadError: Failed to precompile IndexableBitVectors [1cb3b9ac-1ffd-5777-9e6b-a3d42300664d] to C:\Users\Manasee\.julia\compiled\v1.4\IndexableBitVectors\CFT4U_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922 [6] include(::Module, ::String) at .\Base.jl:377 [7] top-level scope at none:2 [8] eval at .\boot.jl:331 [inlined] [9] eval(::Expr) at .\client.jl:449 [10] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\BioSequences\01nDP\src\BioSequences.jl:256``````ERROR: Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to C:\Users\Manasee\.julia\compiled\v1.4\BioSequences\i7zyu_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922  Thank you very much for trying to help me. Best, Manasee On Thursday, 14 May 2020, 11:47:39 pm GMT+5:30, Joe Greener notifications@github.com wrote:

Would you mind putting the error trace in code blocks (```) and keeping the line breaks? That would make it easier to read.

Also, could you give the output of status after entering the package REPL mode?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

[ManaseeTW]

Dear Kevin,,Thank you for taking time to trying to help me out. The status in REPL is shown as  Status `C:\Users\Manasee\.julia\environments\v1.4\Project.toml`  [7e6ae17a] BioSequences v2.0.1I am not sure what you exactly mean by entering the error trace in code blocks with line breaks because I am completely and utterly new to this programming stuff. I hope this is more helpful to you, which is the error I got when 'julia> using BioSequences' is run [ Info: Precompiling BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59]ERROR: LoadError: LoadError: OverflowError: binomial(59, 8) overflowsStacktrace: [1] binomial(::Int32, ::Int32) at .\intfuncs.jl:920 [2] #1 at .\none:0 [inlined] [3] iterate at .\generator.jl:47 [inlined] [4] collect_to! at .\array.jl:711 [inlined] [5] collect_to_with_first!(::Array{Int32,2}, ::Int32, ::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}, ::Tuple{Tuple{Int32,Int32},Tuple{Int32,Int32}}) at .\array.jl:689 [6] collect(::Base.Generator{Base.Iterators.ProductIterator{Tuple{UnitRange{Int32},UnitRange{Int32}}},IndexableBitVectors.var"#1#2"}) at .\array.jl:670 [7] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397 [8] include(::Module, ::String) at .\Base.jl:377 [9] include(::String) at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:1 [10] top-level scope at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28 [11] include(::Module, ::String) at .\Base.jl:377 [12] top-level scope at none:2 [13] eval at .\boot.jl:331 [inlined] [14] eval(::Expr) at .\client.jl:449 [15] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\rrr.jl:397in expression starting at C:\Users\Manasee\.julia\packages\IndexableBitVectors\f1TQ4\src\IndexableBitVectors.jl:28``````ERROR: LoadError: Failed to precompile IndexableBitVectors [1cb3b9ac-1ffd-5777-9e6b-a3d42300664d] to C:\Users\Manasee\.julia\compiled\v1.4\IndexableBitVectors\CFT4U_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922 [6] include(::Module, ::String) at .\Base.jl:377 [7] top-level scope at none:2 [8] eval at .\boot.jl:331 [inlined] [9] eval(::Expr) at .\client.jl:449 [10] top-level scope at .\none:3in expression starting at C:\Users\Manasee\.julia\packages\BioSequences\01nDP\src\BioSequences.jl:256``````ERROR: Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to C:\Users\Manasee\.julia\compiled\v1.4\BioSequences\i7zyu_UwsPd.ji.Stacktrace: [1] error(::String) at .\error.jl:33 [2] compilecache(::Base.PkgId, ::String) at .\loading.jl:1272 [3] _require(::Base.PkgId) at .\loading.jl:1029 [4] require(::Base.PkgId) at .\loading.jl:927 [5] require(::Module, ::Symbol) at .\loading.jl:922  Thank you very much for trying to help me. Best, Manasee

On Saturday, 16 May 2020, 02:11:40 am GMT+5:30, Kevin Bonham <notifications@github.com> wrote:  

I tried editing the comment, because it came from e-mail, the markdown doesn't work. Also all the linebreaks seem to be removed :-/

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

[jgreener64]

Looks like the formatting is getting removed somewhere between your email client and Github. Perhaps you could paste the above information into the GitHub issue directly, which should preserve line breaks and make ``` render the code. Thanks.

[TransGirlCodes]

Every BioSequence version is migrated into General, and this repo is going in archive mode imminently. Please open your issue over at BioSequences.jl's repository if you are still having issues.