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BioJulia
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Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
http://biojulia.dev
MIT License
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add more FASTQ constructors
#451
bicycle1885
closed
7 years ago
1
rename some accessor functions of GFF3
#450
bicycle1885
closed
7 years ago
1
fix doctests
#449
bicycle1885
closed
7 years ago
1
add FASTQ module
#448
bicycle1885
closed
7 years ago
2
Split Seq.Demultiplexer off to BioSeqDemuxers.jl
#447
kdm9
closed
4 years ago
0
Add @kmer_str macro to allow kmer string literals
#446
kdm9
closed
7 years ago
5
Use Bio.Seq.mismatches in demulitplexer
#445
kdm9
closed
7 years ago
4
Update NEWS.md
#444
TransGirlCodes
closed
7 years ago
1
Use BioSymbols.jl
#443
bicycle1885
closed
7 years ago
4
Export the ACGTN constant
#442
kdm9
closed
7 years ago
2
do not print newlines in sequence
#441
bicycle1885
closed
7 years ago
3
add SAM and BAM modules
#440
bicycle1885
closed
7 years ago
2
PDBx/mmCIF and PDBML/XML support.
#439
bicycle1885
closed
4 years ago
6
Deconstruct Phylo
#438
TransGirlCodes
closed
7 years ago
0
Lots of allocations when reading FASTQ files
#437
tlnagy
closed
7 years ago
10
Site counting framework completion
#436
TransGirlCodes
closed
7 years ago
10
Make Bio.Intervals.Interval immutable.
#435
bicycle1885
closed
6 years ago
3
Move organisation level issues
#434
TransGirlCodes
closed
4 years ago
4
Vcf module
#433
bicycle1885
closed
7 years ago
3
fix some Bio.Var tests
#432
bicycle1885
closed
7 years ago
2
move 2bit tools under Bio.Seq.TwoBit
#431
bicycle1885
closed
7 years ago
1
Bio.Structure parsing speedup
#430
jgreener64
closed
7 years ago
4
IntervalCollectionStreamIterator is broken.
#429
bicycle1885
closed
7 years ago
5
Add description() and identifier() to FASTA export
#428
kescobo
closed
7 years ago
1
RFC: More user-friendly flags
#427
jonathanBieler
closed
7 years ago
7
implement eachoverlap
#426
bicycle1885
closed
7 years ago
3
Migrating to modular software organization
#425
TransGirlCodes
closed
4 years ago
86
description() and identifier() not working for FASTA.Reader
#424
kescobo
closed
7 years ago
8
Use of Ternary Operator in Code
#423
kescobo
closed
7 years ago
3
rename a file
#422
bicycle1885
closed
7 years ago
1
Deleted src/seq/bioseq.jl
#421
TransGirlCodes
closed
7 years ago
1
Syntax changes: julia v0.6 Prep.
#420
TransGirlCodes
closed
7 years ago
3
Added index and front-page to manual
#419
TransGirlCodes
closed
7 years ago
1
rewrite BED
#418
bicycle1885
closed
7 years ago
1
use Base.isless to order sequence names by default
#417
bicycle1885
closed
7 years ago
1
Rename home.md to index.md in the docs.
#416
TransGirlCodes
closed
7 years ago
0
Genomic Distances using MASH
#415
kescobo
closed
7 years ago
24
Fix to documentation
#414
TransGirlCodes
closed
7 years ago
2
Rewrite FASTA
#413
bicycle1885
closed
7 years ago
4
refill buffer only when needed
#412
bicycle1885
closed
7 years ago
0
escape only when a GFF3 record is in a target list
#411
bicycle1885
closed
7 years ago
0
Reorganize BioSequence code
#410
TransGirlCodes
closed
7 years ago
2
GFF3 rewrite
#409
bicycle1885
closed
7 years ago
5
revise SAM accessors
#408
bicycle1885
closed
7 years ago
1
VCF accessors
#407
bicycle1885
closed
7 years ago
1
add constructors for SAMRecord
#406
bicycle1885
closed
7 years ago
1
Missing fields
#405
bicycle1885
closed
6 years ago
3
add more methods for VCFHeader like SAMHeader
#404
bicycle1885
closed
7 years ago
2
update README and NEWS
#403
bicycle1885
closed
7 years ago
4
add SAM and BAM to README.md
#402
bicycle1885
closed
7 years ago
0
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