Is there a way to only get the score of two alignments? Let's say that I have two alignments; "MQD--RV--KRP" and "MKKL-K-K-H-P" and I want to get there score. Currently, I'm trying to do:
But this is giving me an error because of - present in the S1 and S2 sequences. Is there a way to only compute the score of different alignments, without actually aligning them? I have a list of alignments already computed and I want to compute their scores only. Any help/guidance would be much appreciated.
Is there a way to only get the score of two alignments? Let's say that I have two alignments;
"MQD--RV--KRP"
and"MKKL-K-K-H-P"
and I want to get there score. Currently, I'm trying to do:But this is giving me an error because of
-
present in theS1
andS2
sequences. Is there a way to only compute the score of different alignments, without actually aligning them? I have a list of alignments already computed and I want to compute their scores only. Any help/guidance would be much appreciated.