BioJulia / BioAlignments.jl

Sequence alignment tools
MIT License
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Release v3.1.0 #89

Closed MillironX closed 1 year ago

MillironX commented 1 year ago

Happy new year, BioJulia! I think we've waited long enough (too long, maybe?) and we should release the changes to BioAlignments. The changes include:

Added

  • Grantham's substitution matrix (#88)
codecov[bot] commented 1 year ago

Codecov Report

Base: 88.28% // Head: 88.72% // Increases project coverage by +0.44% :tada:

Coverage data is based on head (2504591) compared to base (26be95a). Patch has no changes to coverable lines.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #89 +/- ## ========================================== + Coverage 88.28% 88.72% +0.44% ========================================== Files 16 17 +1 Lines 1178 1224 +46 ========================================== + Hits 1040 1086 +46 Misses 138 138 ``` | [Impacted Files](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia) | Coverage Δ | | |---|---|---| | [src/BioAlignments.jl](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL0Jpb0FsaWdubWVudHMuamw=) | `100.00% <0.00%> (ø)` | | | [src/pairwise/algorithms/needleman\_wunsch.jl](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL3BhaXJ3aXNlL2FsZ29yaXRobXMvbmVlZGxlbWFuX3d1bnNjaC5qbA==) | `84.32% <0.00%> (+0.73%)` | :arrow_up: | | [src/pairwise/algorithms/common.jl](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL3BhaXJ3aXNlL2FsZ29yaXRobXMvY29tbW9uLmps) | `92.10% <0.00%> (+1.48%)` | :arrow_up: | | [src/pairwise/algorithms/banded\_needleman\_wunsch.jl](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL3BhaXJ3aXNlL2FsZ29yaXRobXMvYmFuZGVkX25lZWRsZW1hbl93dW5zY2guamw=) | `78.37% <0.00%> (+3.37%)` | :arrow_up: | | [src/operations.jl](https://codecov.io/gh/BioJulia/BioAlignments.jl/pull/89/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL29wZXJhdGlvbnMuamw=) | `92.10% <0.00%> (+3.86%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia)

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