BioJulia / BioSequences.jl

Biological sequences for the julia language
http://biojulia.dev/BioSequences.jl
MIT License
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Allow translation of LongSubSeq #288

Closed jakobnissen closed 1 year ago

jakobnissen commented 1 year ago

This also fixes an issue in the translation code, and adds another constructor to LongSubSeq that I thought was missing.

Supersedes #264 Closes #263

codecov[bot] commented 1 year ago

Codecov Report

All modified lines are covered by tests :white_check_mark:

Comparison is base (b57a94a) 90.96% compared to head (e9743cb) 91.06%. Report is 1 commits behind head on master.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #288 +/- ## ========================================== + Coverage 90.96% 91.06% +0.09% ========================================== Files 31 31 Lines 2402 2395 -7 ========================================== - Hits 2185 2181 -4 + Misses 217 214 -3 ``` | [Flag](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia) | `91.06% <100.00%> (+0.09%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia) | Coverage Δ | | |---|---|---| | [src/geneticcode.jl](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL2dlbmV0aWNjb2RlLmps) | `81.41% <100.00%> (+0.88%)` | :arrow_up: | | [src/longsequences/seqview.jl](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL2xvbmdzZXF1ZW5jZXMvc2Vxdmlldy5qbA==) | `100.00% <100.00%> (ø)` | | ... and [1 file with indirect coverage changes](https://app.codecov.io/gh/BioJulia/BioSequences.jl/pull/288/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia)

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