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BioJulia / FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
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FASTX.Records need a single-line representation #54

Closed jakobnissen closed 1 year ago

jakobnissen commented 3 years ago

A vector of records display like:

3-element Vector{FASTX.FASTA.Record}:
 FASTX.FASTA.Record:
   identifier: A-seg1
  description: <missing>
     sequence: AGCAAAAGCAGGTCAATTATATTCAGTATGGAAAGAATA…
 FASTX.FASTA.Record:
   identifier: A-seg2
  description: <missing>
     sequence: AGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCG…
 FASTX.FASTA.Record:
   identifier: A-seg3
  description: <missing>
     sequence: AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTG…

It would be nicer if it was something like

3-element Vector{FASTX.FASTA.Record}:
 FASTX.FASTA.Record("A-seg1", nothing, AGCAAAAGCAGGTCAATTATATTCAGTATGGAAAGAATA…)
 FASTX.FASTA.Record("A-seg2", nothing, AGCAAAAGCAGGCAAACCATTTGAATGGATGTCAATCCG…)
 FASTX.FASTA.Record("A-seg3", nothing, AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTG…)
jakobnissen commented 1 year ago

Closed in #106