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BioJulia / FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
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Export all user-facing functions #58

Closed jakobnissen closed 2 years ago

jakobnissen commented 2 years ago

This exports hassequence, hasdescription, header, and other functions that are user-facing, but not exported.

I have not exported FASTQRead, because we do not agree about whether this should ultimately be in FASTX. https://github.com/BioJulia/FASTX.jl/pull/35#issuecomment-713198555

codecov[bot] commented 2 years ago

Codecov Report

Merging #58 (eb0bda0) into master (c707997) will increase coverage by 0.50%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #58      +/-   ##
==========================================
+ Coverage   83.89%   84.39%   +0.50%     
==========================================
  Files          12       12              
  Lines         627      660      +33     
==========================================
+ Hits          526      557      +31     
- Misses        101      103       +2
Flag Coverage Δ
unittests 84.39% <100.00%> (+0.50%) :arrow_up:

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Impacted Files Coverage Δ
src/FASTX.jl 100.00% <ø> (ø)
src/fasta/record.jl 81.25% <100.00%> (+0.95%) :arrow_up:
src/fastq/record.jl 84.05% <100.00%> (+0.59%) :arrow_up:
src/fastq/reader.jl 89.36% <0.00%> (-1.12%) :arrow_down:
src/fasta/reader.jl 89.85% <0.00%> (-0.77%) :arrow_down:
src/fasta/index.jl 100.00% <0.00%> (ø)
src/fastq/writer.jl 96.77% <0.00%> (+0.22%) :arrow_up:
src/fasta/writer.jl 96.29% <0.00%> (+0.29%) :arrow_up:
... and 2 more

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