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BioJulia / FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
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Bump BioSequences/BioSymbols to v3/v5 #66

Closed jakobnissen closed 2 years ago

jakobnissen commented 2 years ago

This creates a new version of FASTX using the latest BioSequences/BioSymbols. It contains no breaking changes.

I think FASTX could use a more thorough release where e.g. the tests are fixed up. But that's a larger undertaking, this is just to allow BioSequences v3 to be used with FASTX.

codecov[bot] commented 2 years ago

Codecov Report

Merging #66 (00094c5) into master (0093974) will not change coverage. The diff coverage is 85.71%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master      #66   +/-   ##
=======================================
  Coverage   84.39%   84.39%           
=======================================
  Files          12       12           
  Lines         660      660           
=======================================
  Hits          557      557           
  Misses        103      103
Flag Coverage Δ
unittests 84.39% <85.71%> (ø)

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Impacted Files Coverage Δ
src/fasta/record.jl 81.25% <75.00%> (ø)
src/fastq/record.jl 84.05% <100.00%> (ø)

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