Migrate to new Automa release - Githubissues

BioJulia / FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.

https://biojulia.dev

MIT License

61 stars 20 forks source link

Migrate to new Automa release #82

Closed jakobnissen closed 1 year ago

jakobnissen commented 2 years ago

Just a reminder to upgrade to the new Automa release when it is eventually done (may not be until the end of 2022).

Things to remember to include, if possible:

Check new improved error messages work with various kinds of malformed FASTX files/records
Is it possible to parse a FASTX from a string without using IO objects as intermediate (if possible, no big deal, see #80 )
Benchmark that it does not cause significant speed regressions