BioJulia / FASTX.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
61 stars 20 forks source link

Migrate from SnoopPrecompile to PrecompileTools #98

Closed timholy closed 1 year ago

timholy commented 1 year ago

This pull request migrates the package from SnoopPrecompile to PrecompileTools. PrecompileTools is nearly a drop-in replacement except that there are changes in naming and how developers locally disable precompilation (to make their development workflow more efficient). These changes are described in PrecompileTool's enhanced documentation, which also includes instructions for users on how to set up custom "Startup" packages, handling precompilation tasks that are not amenable to workloads, and tips for troubleshooting.

Why the new package? It meets several goals:

For more information and discussion, see this discourse post.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and no project coverage change.

Comparison is base (0f545b9) 90.82% compared to head (215078f) 90.82%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #98 +/- ## ======================================= Coverage 90.82% 90.82% ======================================= Files 15 15 Lines 676 676 ======================================= Hits 614 614 Misses 62 62 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `90.82% <100.00%> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/BioJulia/FASTX.jl/pull/98?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia) | Coverage Δ | | |---|---|---| | [src/workload.jl](https://codecov.io/gh/BioJulia/FASTX.jl/pull/98?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia#diff-c3JjL3dvcmtsb2FkLmps) | `100.00% <100.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=BioJulia)

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