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BioJulia / GenomicAnnotations.jl

MIT License
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GzipDecompressorStream not defined #8

Closed jowch closed 2 years ago

jowch commented 2 years ago

Hi, I'm trying to open a .gbff.gz file and I'm getting the following error:

julia> readgbk(joinpath(DATA_DIR, "genome.gbff.gz"))
ERROR: UndefVarError: GzipDecompressorStream not defined
Stacktrace:
 [1] open(#unused#::Type{GenomicAnnotations.GenBank.Reader}, input::String)
   @ GenomicAnnotations.GenBank ~/.julia/packages/GenomicAnnotations/aGEUx/src/GenBank/reader.jl:31
 [2] readgbk(input::String)
   @ GenomicAnnotations ~/.julia/packages/GenomicAnnotations/aGEUx/src/utils.jl:65
 [3] top-level scope
   @ REPL[5]:1

Any help would be much appreciated. Thanks!

kdyrhage commented 2 years ago

I've fixed this in v0.3.1 and made it available in General.

jowch commented 2 years ago

Thanks! Works now.