search

BioJulia / GenomicFeatures.jl

Tools for genomic features in Julia.
Other
32 stars 13 forks source link

Test status check #43

Closed CiaranOMara closed 2 years ago

CiaranOMara commented 2 years ago

The workflow_run workflows don't seem to show up in the status check.

github-actions[bot] commented 2 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmarks: - Target: 21 Oct 2021 - 01:16 - Baseline: 21 Oct 2021 - 01:17 * Package commits: - Target: c1ca1a - Baseline: d6de93 * Julia commits: - Target: ae8452 - Baseline: ae8452 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |---------------------------------------------------------------------------|------------------------------|---------------| | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 0.89 (5%) :white_check_mark: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 0.84 (5%) :white_check_mark: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 0.92 (5%) :white_check_mark: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 0.98 (5%) | 1.05 (1%) :x: | | `["push", "Vector{Interval{Int64}}"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ### Target ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.8.0-1042-azure #45~20.04.1-Ubuntu SMP Wed Sep 15 14:24:15 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1554 s 1 s 208 s 1062 s 0 s #2 2294 MHz 997 s 1 s 168 s 1675 s 0 s Memory: 6.790924072265625 GB (3413.73828125 MB free) Uptime: 288.0 sec Load Avg: 1.05 0.76 0.34 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.8.0-1042-azure #45~20.04.1-Ubuntu SMP Wed Sep 15 14:24:15 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1654 s 1 s 213 s 1733 s 0 s #2 2294 MHz 1640 s 1 s 211 s 1766 s 0 s Memory: 6.790924072265625 GB (3353.63671875 MB free) Uptime: 366.0 sec Load Avg: 1.01 0.82 0.4 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 21 Oct 2021 - 1:16 * Package commit: c1ca1a * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.130 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.160 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.130 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 1.856 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 854.000 ns (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 477.232 ms (5%) | 11.032 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 131.238 ms (5%) | 28.113 ms | 227.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 35.027 ms (5%) | 5.756 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 126.585 ms (5%) | 25.253 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 34.600 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 33.800 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 263.701 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 162.102 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.8.0-1042-azure #45~20.04.1-Ubuntu SMP Wed Sep 15 14:24:15 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1554 s 1 s 208 s 1062 s 0 s #2 2294 MHz 997 s 1 s 168 s 1675 s 0 s Memory: 6.790924072265625 GB (3413.73828125 MB free) Uptime: 288.0 sec Load Avg: 1.05 0.76 0.34 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 21 Oct 2021 - 1:17 * Package commit: d6de93 * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.130 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.300 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.340 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 2.011 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 836.000 ns (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 497.730 ms (5%) | 41.344 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 133.952 ms (5%) | 21.938 ms | 217.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 36.036 ms (5%) | 5.872 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 126.203 ms (5%) | 24.082 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 36.300 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 34.200 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 280.602 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 155.201 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.8.0-1042-azure #45~20.04.1-Ubuntu SMP Wed Sep 15 14:24:15 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1654 s 1 s 213 s 1733 s 0 s #2 2294 MHz 1640 s 1 s 211 s 1766 s 0 s Memory: 6.790924072265625 GB (3353.63671875 MB free) Uptime: 366.0 sec Load Avg: 1.01 0.82 0.4 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.684 BogoMIPS: 4589.36 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Full generic retpoline, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 2 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmarks: - Target: 13 Nov 2021 - 13:12 - Baseline: 13 Nov 2021 - 13:13 * Package commits: - Target: 1def22 - Baseline: d6de93 * Julia commits: - Target: ae8452 - Baseline: ae8452 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |---------------------------------------------------------------------------|------------------------------|---------------| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.14 (5%) :x: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.16 (5%) :x: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.20 (5%) :x: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 1.22 (5%) :x: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 1.07 (5%) :x: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 0.90 (5%) :white_check_mark: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 1.01 (5%) | 1.05 (1%) :x: | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 1.07 (5%) :x: | 1.00 (1%) | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 1.08 (5%) :x: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ### Target ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1363 s 0 s 181 s 1955 s 0 s #2 2294 MHz 1364 s 2 s 230 s 1931 s 0 s Memory: 6.788990020751953 GB (3393.0234375 MB free) Uptime: 385.0 sec Load Avg: 1.1 0.98 0.49 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1932 s 0 s 220 s 2157 s 0 s #2 2294 MHz 1573 s 2 s 237 s 2523 s 0 s Memory: 6.788990020751953 GB (3352.73046875 MB free) Uptime: 466.0 sec Load Avg: 1.04 1.0 0.54 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 13 Nov 2021 - 13:12 * Package commit: 1def22 * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.660 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.690 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.710 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 2.700 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 1.090 μs (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 489.665 ms (5%) | 9.870 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 146.073 ms (5%) | 27.840 ms | 227.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 41.088 ms (5%) | 7.033 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 144.494 ms (5%) | 31.674 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 44.900 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 42.600 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 312.101 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 178.201 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1363 s 0 s 181 s 1955 s 0 s #2 2294 MHz 1364 s 2 s 230 s 1931 s 0 s Memory: 6.788990020751953 GB (3393.0234375 MB free) Uptime: 385.0 sec Load Avg: 1.1 0.98 0.49 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 13 Nov 2021 - 13:13 * Package commit: d6de93 * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.450 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.460 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.430 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 2.222 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 1.020 μs (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 546.392 ms (5%) | 9.561 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 144.569 ms (5%) | 28.102 ms | 217.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 38.402 ms (5%) | 6.068 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 133.744 ms (5%) | 27.928 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 46.500 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 44.300 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 328.301 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 181.801 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1932 s 0 s 220 s 2157 s 0 s #2 2294 MHz 1573 s 2 s 237 s 2523 s 0 s Memory: 6.788990020751953 GB (3352.73046875 MB free) Uptime: 466.0 sec Load Avg: 1.04 1.0 0.54 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.683 BogoMIPS: 4589.36 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Full generic retpoline, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 2 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmarks: - Target: 15 Nov 2021 - 02:28 - Baseline: 15 Nov 2021 - 02:29 * Package commits: - Target: 9ad7d7 - Baseline: d6de93 * Julia commits: - Target: ae8452 - Baseline: ae8452 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |---------------------------------------------------------------------------|------------------------------|---------------| | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 0.84 (5%) :white_check_mark: | 1.00 (1%) | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 0.94 (5%) :white_check_mark: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 0.92 (5%) :white_check_mark: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 1.12 (5%) :x: | 1.05 (1%) :x: | | `["push", "Vector{Interval{Int64}}"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["sort", "Vector{Interval{Int64}}"]` | 0.95 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ### Target ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1777 s 2 s 261 s 3920 s 0 s #2 2294 MHz 1024 s 1 s 181 s 4777 s 0 s Memory: 6.788990020751953 GB (3344.33984375 MB free) Uptime: 604.0 sec Load Avg: 1.07 0.83 0.41 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1790 s 2 s 267 s 4736 s 0 s #2 2294 MHz 1814 s 1 s 221 s 4780 s 0 s Memory: 6.788990020751953 GB (3306.23046875 MB free) Uptime: 688.0 sec Load Avg: 1.04 0.89 0.47 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 15 Nov 2021 - 2:28 * Package commit: 9ad7d7 * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.370 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.440 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.350 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 1.811 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 970.000 ns (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 517.153 ms (5%) | 10.961 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 156.228 ms (5%) | 28.695 ms | 227.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 38.918 ms (5%) | 7.011 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 130.234 ms (5%) | 17.573 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 42.900 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 42.401 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 276.103 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 163.502 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1777 s 2 s 261 s 3920 s 0 s #2 2294 MHz 1024 s 1 s 181 s 4777 s 0 s Memory: 6.788990020751953 GB (3344.33984375 MB free) Uptime: 604.0 sec Load Avg: 1.07 0.83 0.41 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 15 Nov 2021 - 2:29 * Package commit: d6de93 * Julia commit: ae8452 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.440 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.410 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.320 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 2.167 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 1.030 μs (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 562.269 ms (5%) | 9.478 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 139.188 ms (5%) | 27.754 ms | 217.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 37.683 ms (5%) | 6.664 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 129.423 ms (5%) | 26.589 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 42.101 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 42.301 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 298.003 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 172.401 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.3 Commit ae8452a9e0 (2021-09-23 17:34 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1020-azure #21~20.04.1-Ubuntu SMP Mon Oct 11 18:54:28 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 1790 s 2 s 267 s 4736 s 0 s #2 2294 MHz 1814 s 1 s 221 s 4780 s 0 s Memory: 6.788990020751953 GB (3306.23046875 MB free) Uptime: 688.0 sec Load Avg: 1.04 0.89 0.47 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.687 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Full generic retpoline, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |
github-actions[bot] commented 2 years ago
Benchmark result # Judge result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmarks: - Target: 21 Nov 2021 - 01:44 - Baseline: 21 Nov 2021 - 01:45 * Package commits: - Target: 2add77 - Baseline: d6de93 * Julia commits: - Target: 35f0c9 - Baseline: 35f0c9 * Julia command flags: - Target: None - Baseline: None * Environment variables: - Target: None - Baseline: None ## Results A ratio greater than `1.0` denotes a possible regression (marked with :x:), while a ratio less than `1.0` denotes a possible improvement (marked with :white_check_mark:). Only significant results - results that indicate possible regressions or improvements - are shown below (thus, an empty table means that all benchmark results remained invariant between builds). | ID | time ratio | memory ratio | |---------------------------------------------------------------------------|------------------------------|---------------| | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 1.00 (5%) | 1.05 (1%) :x: | | `["push", "Vector{Interval{Int64}}"]` | 0.93 (5%) :white_check_mark: | 1.00 (1%) | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ### Target ``` Julia Version 1.6.4 Commit 35f0c911f4 (2021-11-19 03:54 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1021-azure #22~20.04.1-Ubuntu SMP Fri Oct 29 01:11:25 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 796 s 2 s 131 s 1434 s 0 s #2 2294 MHz 1390 s 1 s 218 s 756 s 0 s Memory: 6.788982391357422 GB (3402.78125 MB free) Uptime: 241.61 sec Load Avg: 1.03 0.61 0.25 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` ### Baseline ``` Julia Version 1.6.4 Commit 35f0c911f4 (2021-11-19 03:54 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1021-azure #22~20.04.1-Ubuntu SMP Fri Oct 29 01:11:25 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 903 s 2 s 135 s 1971 s 0 s #2 2294 MHz 1900 s 1 s 259 s 856 s 0 s Memory: 6.788982391357422 GB (3390.1015625 MB free) Uptime: 306.64 sec Load Avg: 1.01 0.69 0.31 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Target result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 21 Nov 2021 - 1:44 * Package commit: 2add77 * Julia commit: 35f0c9 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.090 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.060 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.080 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 1.530 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 828.767 ns (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 344.124 ms (5%) | 7.796 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 108.126 ms (5%) | 19.240 ms | 227.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 31.992 ms (5%) | 5.600 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 105.410 ms (5%) | 13.531 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 31.600 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 31.700 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 250.601 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 152.700 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.4 Commit 35f0c911f4 (2021-11-19 03:54 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1021-azure #22~20.04.1-Ubuntu SMP Fri Oct 29 01:11:25 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 796 s 2 s 131 s 1434 s 0 s #2 2294 MHz 1390 s 1 s 218 s 756 s 0 s Memory: 6.788982391357422 GB (3402.78125 MB free) Uptime: 241.61 sec Load Avg: 1.03 0.61 0.25 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Baseline result # Benchmark Report for */home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl* ## Job Properties * Time of benchmark: 21 Nov 2021 - 1:45 * Package commit: d6de93 * Julia commit: 35f0c9 * Julia command flags: None * Environment variables: None ## Results Below is a table of this job's results, obtained by running the benchmarks. The values listed in the `ID` column have the structure `[parent_group, child_group, ..., key]`, and can be used to index into the BaseBenchmarks suite to retrieve the corresponding benchmarks. The percentages accompanying time and memory values in the below table are noise tolerances. The "true" time/memory value for a given benchmark is expected to fall within this percentage of the reported value. An empty cell means that the value was zero. | ID | time | GC time | memory | allocations | |---------------------------------------------------------------------------|----------------:|----------:|----------------:|------------:| | `["accessors", "Vector{Interval{Int64}}", "leftposition"]` | 1.100 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "metadata"]` | 1.100 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "rightposition"]` | 1.110 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "seqname"]` | 1.610 μs (5%) | | 7.94 KiB (1%) | 1 | | `["accessors", "Vector{Interval{Int64}}", "strand"]` | 823.288 ns (5%) | | 1.06 KiB (1%) | 1 | | `["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]` | 371.186 ms (5%) | 7.602 ms | 99.91 MiB (1%) | 591412 | | `["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]` | 108.397 ms (5%) | 23.007 ms | 217.44 MiB (1%) | 2036657 | | `["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]` | 31.372 ms (5%) | 5.343 ms | 81.86 MiB (1%) | 295706 | | `["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]` | 107.218 ms (5%) | 21.654 ms | 211.00 MiB (1%) | 2035654 | | `["insert", "shorthand"]` | 31.000 μs (5%) | | 78.81 KiB (1%) | 96 | | `["insert", "type"]` | 30.300 μs (5%) | | 78.81 KiB (1%) | 96 | | `["push", "Vector{Interval{Int64}}"]` | 270.100 μs (5%) | | 129.16 KiB (1%) | 1725 | | `["sort", "Vector{Interval{Int64}}"]` | 154.901 μs (5%) | | 58.84 KiB (1%) | 4 | ## Benchmark Group List Here's a list of all the benchmark groups executed by this job: - `["accessors", "Vector{Interval{Int64}}"]` - `["eachoverlap"]` - `["insert"]` - `["push"]` - `["sort"]` ## Julia versioninfo ``` Julia Version 1.6.4 Commit 35f0c911f4 (2021-11-19 03:54 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) Ubuntu 20.04.3 LTS uname: Linux 5.11.0-1021-azure #22~20.04.1-Ubuntu SMP Fri Oct 29 01:11:25 UTC 2021 x86_64 x86_64 CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: speed user nice sys idle irq #1 2294 MHz 903 s 2 s 135 s 1971 s 0 s #2 2294 MHz 1900 s 1 s 259 s 856 s 0 s Memory: 6.788982391357422 GB (3390.1015625 MB free) Uptime: 306.64 sec Load Avg: 1.01 0.69 0.31 WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-11.0.1 (ORCJIT, broadwell) ``` --- # Runtime information | Runtime Info | | |:--|:--| | BLAS #threads | 2 | | `BLAS.vendor()` | `openblas64` | | `Sys.CPU_THREADS` | 2 | `lscpu` output: Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian Address sizes: 46 bits physical, 48 bits virtual CPU(s): 2 On-line CPU(s) list: 0,1 Thread(s) per core: 1 Core(s) per socket: 2 Socket(s): 1 NUMA node(s): 1 Vendor ID: GenuineIntel CPU family: 6 Model: 79 Model name: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz Stepping: 1 CPU MHz: 2294.685 BogoMIPS: 4589.37 Hypervisor vendor: Microsoft Virtualization type: full L1d cache: 64 KiB L1i cache: 64 KiB L2 cache: 512 KiB L3 cache: 50 MiB NUMA node0 CPU(s): 0,1 Vulnerability Itlb multihit: KVM: Mitigation: VMX unsupported Vulnerability L1tf: Mitigation; PTE Inversion Vulnerability Mds: Mitigation; Clear CPU buffers; SMT Host state unknown Vulnerability Meltdown: Mitigation; PTI Vulnerability Spec store bypass: Vulnerable Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization Vulnerability Spectre v2: Mitigation; Full generic retpoline, STIBP disabled, RSB filling Vulnerability Srbds: Not affected Vulnerability Tsx async abort: Mitigation; Clear CPU buffers; SMT Host state unknown Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear | Cpu Property | Value | |:------------------ |:------------------------------------------------------- | | Brand | Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz | | Vendor | :Intel | | Architecture | :Broadwell | | Model | Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00 | | Cores | 2 physical cores, 2 logical cores (on executing CPU) | | | No Hyperthreading hardware capability detected | | Clock Frequencies | Not supported by CPU | | Data Cache | Level 1:3 : (32, 256, 51200) kbytes | | | 64 byte cache line size | | Address Size | 48 bits virtual, 46 bits physical | | SIMD | 256 bit = 32 byte max. SIMD vector size | | Time Stamp Counter | TSC is accessible via `rdtsc` | | | TSC increased at every clock cycle (non-invariant TSC) | | Perf. Monitoring | Performance Monitoring Counters (PMC) are not supported | | Hypervisor | Yes, Microsoft |