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BioJulia / Libz.jl

Fast, flexible zlib bindings.
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Failed on both 0.4 and master #29

Closed sfchen closed 8 years ago

sfchen commented 8 years ago

Mac OSX, both failing

bicycle1885 commented 8 years ago

Can you give me more details? Version, reproducible code, etc. I cannot do anything without it. The current release version (v0.1.1) passed tests on Travis CI (https://travis-ci.org/BioJulia/Libz.jl/builds/129039284).

sfchen commented 8 years ago

0.4.2 is failing

julia> Pkg.test("Libz") INFO: Computing test dependencies for Libz... INFO: Installing FactCheck v0.4.2 INFO: Testing Libz Source Error :: (line:505) Expression: test_round_trip(UInt8[]) --> true MethodError: readbytes! has no method matching readbytes!(::Libz.Source{:inflate,BufferedStreams.BufferedInputStream{Libz.Source{:deflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}}, ::Array{UInt8,1}, ::Int64, ::Int64) you may have intended to import Base.readbytes! Closest candidates are: readbytes!(::BufferedStreams.BufferedInputStream{T}, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IOStream, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IO, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) ... in fillbuffer! at /Users/shifu/.julia/v0.4/BufferedStreams/src/bufferedinputstream.jl:71 in readbytes! at io.jl:240 in readbytes at io.jl:258 in readbytes at io.jl:257 in test_round_trip at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:8 in anonymous at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in do_fact at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:333 [inlined code] from /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in anonymous at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:7 in facts at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:448 in include at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in include_from_node1 at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in process_options at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in _start at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib Error :: (line:505) Expression: test_round_trip(rand(UInt8,1)) --> true MethodError: readbytes! has no method matching readbytes!(::Libz.Source{:inflate,BufferedStreams.BufferedInputStream{Libz.Source{:deflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}}, ::Array{UInt8,1}, ::Int64, ::Int64) you may have intended to import Base.readbytes! Closest candidates are: readbytes!(::BufferedStreams.BufferedInputStream{T}, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IOStream, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IO, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) ... in fillbuffer! at /Users/shifu/.julia/v0.4/BufferedStreams/src/bufferedinputstream.jl:71 in readbytes! at io.jl:240 in readbytes at io.jl:258 in readbytes at io.jl:257 in test_round_trip at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:8 in anonymous at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in do_fact at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:333 [inlined code] from /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in anonymous at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:7 in facts at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:448 in include at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in include_from_node1 at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in process_options at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in _start at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib Error :: (line:505) Expression: test_round_trip(rand(UInt8,1000000)) --> true MethodError: readbytes! has no method matching readbytes!(::Libz.Source{:inflate,BufferedStreams.BufferedInputStream{Libz.Source{:deflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}}, ::Array{UInt8,1}, ::Int64, ::Int64) you may have intended to import Base.readbytes! Closest candidates are: readbytes!(::BufferedStreams.BufferedInputStream{T}, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IOStream, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) readbytes!(::IO, ::AbstractArray{UInt8,N}, ::Int64, ::Int64) ... in fillbuffer! at /Users/shifu/.julia/v0.4/BufferedStreams/src/bufferedinputstream.jl:71 in readbytes! at io.jl:240 in readbytes at io.jl:258 in readbytes at io.jl:257 in test_round_trip at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:8 in anonymous at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in do_fact at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:333 [inlined code] from /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:271 in anonymous at /Users/shifu/.julia/v0.4/Libz/test/runtests.jl:7 in facts at /Users/shifu/.julia/v0.4/FactCheck/src/FactCheck.jl:448 in include at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in include_from_node1 at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in process_options at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib in _start at /Applications/Julia-0.4.2.app/Contents/Resources/julia/lib/julia/sys.dylib Out of 3 total facts: Errored: 3 Sink Failure :: (line:505) :: fact was false Expression: test_round_trip(rand(UInt8,1)) --> true Expected: true Occurred: false

sfchen commented 8 years ago

master is PASSED with some warnings

INFO: Computing test dependencies for Libz... INFO: Installing BaseTestNext v0.2.1 INFO: Testing Libz INFO: Recompiling stale cache file /Users/shifu/.julia/lib/v0.5/BufferedStreams.ji for module BufferedStreams. INFO: Recompiling stale cache file /Users/shifu/.julia/lib/v0.5/Libz.ji for module Libz. WARNING: @unix_only is deprecated, use @static if is_unix() instead in depwarn(::String, ::Symbol) at ./deprecated.jl:64 in @unix_only(::Any) at ./deprecated.jl:494 in include_from_node1(::String) at ./loading.jl:426 (repeats 2 times) in macro expansion; at ./none:2 [inlined] in anonymous at ./:? in eval(::Module, ::Any) at ./boot.jl:225 in process_options(::Base.JLOptions) at ./client.jl:243 in _start() at ./client.jl:322 while loading /Users/shifu/.julia/v0.5/Libz/src/zlib_h.jl, in expression starting on line 3 WARNING: bytestring(p::Union{Ptr{Int8},Ptr{UInt8}}) is deprecated, use String(p) instead. in depwarn(::String, ::Symbol) at ./deprecated.jl:64 in bytestring(::Ptr{UInt8}) at ./deprecated.jl:50 in anonymous at ./:? in include_from_node1(::String) at ./loading.jl:426 (repeats 2 times) in macro expansion; at ./none:2 [inlined] in anonymous at ./:? in eval(::Module, ::Any) at ./boot.jl:225 in process_options(::Base.JLOptions) at ./client.jl:243 in _start() at ./client.jl:322 while loading /Users/shifu/.julia/v0.5/Libz/src/zlib_h.jl, in expression starting on line 8 WARNING: bytestring(p::Union{Ptr{Int8},Ptr{UInt8}}) is deprecated, use String(p) instead. in depwarn(::String, ::Symbol) at ./deprecated.jl:64 in bytestring(::Ptr{UInt8}) at ./deprecated.jl:50 in zerror(::Libz.ZStream, ::Int32) at /Users/shifu/.julia/v0.5/Libz/src/zlib_h.jl:149 in process(::Libz.Source{:inflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}, ::Int32) at /Users/shifu/.julia/v0.5/Libz/src/source.jl:182 in readbytes!(::Libz.Source{:inflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}, ::Array{UInt8,1}, ::Int64, ::Int64) at /Users/shifu/.julia/v0.5/Libz/src/source.jl:142 in fillbuffer!(::BufferedStreams.BufferedInputStream{Libz.Source{:inflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}) at /Users/shifu/.julia/v0.5/BufferedStreams/src/bufferedinputstream.jl:72 in eof at /Users/shifu/.julia/v0.5/BufferedStreams/src/bufferedinputstream.jl:84 [inlined] in readbytes!(::BufferedStreams.BufferedInputStream{Libz.Source{:inflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}, ::Array{UInt8,1}, ::Int64) at ./io.jl:330 in read(::BufferedStreams.BufferedInputStream{Libz.Source{:inflate,BufferedStreams.BufferedInputStream{BufferedStreams.EmptyStream}}}, ::Int64) at ./io.jl:350 in macro expansion; at /Users/shifu/.julia/v0.5/Libz/test/runtests.jl:39 [inlined] in macro expansion; at ./test.jl:583 [inlined] in anonymous at ./:580 in include_from_node1(::String) at ./loading.jl:426 in process_options(::Base.JLOptions) at ./client.jl:266 in _start() at ./client.jl:322 while loading /Users/shifu/.julia/v0.5/Libz/test/runtests.jl, in expression starting on line 12 Test Summary: | Pass Total Source | 94 94 Test Summary: | Pass Total Sink | 55 55 Test Summary: | Pass Total Inflate/Deflate | 1 1 Test Summary: | Pass Total Checksums | 4 4 Test Summary: | Pass Total Concatenated gzip files | 1 1 Test Summary: | Pass Total Error | 6 6 INFO: Libz tests passed INFO: Removing BaseTestNext v0.2.1

sfchen commented 8 years ago

Sorry, after a manual update of METADA,seems it is working.

My METADATA was broken and blocked any further updating..

Closing this issue

bicycle1885 commented 8 years ago

😄