v0.6.0 - Githubissues

BioJulia / PopGen.jl

Population Genetics in Julia

https://biojulia.github.io/PopGen.jl/

MIT License

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v0.6.0 #64

Closed pdimens closed 3 years ago

pdimens commented 3 years ago

New features:

Hudson pairwise FST & Permutation
- adds the Hudson et all 1992 method
isbiallelic
- adds boolean test if a PopData object has only biallelic loci
- adds boolean test if a GenoArray is biallelic
drop_multiallelic
- mutating and non-mutating methods to remove non-biallelic loci from a PopData object

Bug fixes:

vcf and bcf kwarg rename_loci now consistent in functions and docstrings
generate_meta now uses a comprehension rather than deprecated map(fn, groupeddataframe) method

Non-breaking changes:

drop_monomorphic now uses the same logic as drop_multiallelic, which should make it faster and leaner

Breaking Changes:

None, I think