BioJulia XAM.jl issues - Githubissues

BioJulia / XAM.jl

Parse and process SAM and BAM formatted files

MIT License

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issues

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Support for Concurrent Access with XAM.jl: Reader/Writer Safety and Locking Considerations

#76 abhinavsns opened 1 month ago
0
Read sequences don't have overlapping with gene, but eachoverlap() reported there're.

#75 Xiao-Zhong opened 2 months ago
5
CompatHelper: bump compat for TranscodingStreams to 0.11, (keep existing compat)

#74 github-actions[bot] closed 2 months ago
3
Has flag() renamed to flags()?

#73 egoecho opened 4 months ago
1
error when using SAM.auxdata(record)

#72 yr-neurospace closed 5 months ago
1
Do not allow unused trailing bytes in BAM records

#71 jakobnissen opened 7 months ago
1
Rewrite BAM auxiliary data

#70 jakobnissen opened 7 months ago
3
CompatHelper: bump compat for GenomicFeatures to 3, (keep existing compat)

#69 github-actions[bot] opened 8 months ago
0
CompatHelper: bump compat for Indexes to 0.2, (keep existing compat)

#68 github-actions[bot] opened 8 months ago
0
Correct YML whitespace

#67 CiaranOMara closed 8 months ago
0
Release/v0.4.0

#66 CiaranOMara closed 8 months ago
1
Update Automa to v1

#65 jakobnissen closed 8 months ago
0
XAM compatibilty for Automa very old, please update?

#64 mashu closed 8 months ago
0
add conversion from SAM to BAM

#63 jonathanBieler closed 6 months ago
7
Fix deprecated find in header docs

#62 jonathanBieler closed 1 year ago
0
[WIP] convert SAM to BAM

#61 jonathanBieler closed 6 months ago
1
while loop got eof error

#60 junjunlab opened 1 year ago
1
Add eachoverlap(reader::Reader, refname::String)

#59 apraga opened 1 year ago
0
Correct way to add records to an array

#58 krishvishal closed 1 year ago
1
Release 0.3.1

#57 MillironX closed 1 year ago
0
added method for handling different bam index types

#56 jonathanBieler closed 1 year ago
0
Upgrade to BioAlignments v3

#55 MillironX closed 1 year ago
0
Switch to Oneflow

#53 MillironX opened 2 years ago
3
Release v0.3.0

#52 MillironX closed 1 year ago
2
Do you have the plan to add the pileup functions?

#51 panxiaoguang opened 2 years ago
8
hotfix/issue 31

#50 CiaranOMara closed 2 years ago
0
Add `index!(reader::Reader, path)`

#49 CiaranOMara opened 2 years ago
0
Upgrade BioAlignments to v2.2 & BioSequences to v3

#48 MillironX closed 2 years ago
0
Finding a map between observed bases and positions in the reference genome

#46 scikal opened 2 years ago
4
Feature Request: Conversion from `BioAlignments` to `SAM.Record`

#45 MillironX opened 2 years ago
0
how to use @threads to use multithreads when reading BAM file

#44 panxiaoguang closed 2 years ago
2
Improve documentation of flag function

#43 jakobnissen closed 2 years ago
0
Make `seqname` consistent with BioJulia ecosystem

#42 CiaranOMara opened 2 years ago
0
Install ERROR: Unsatisfiable requirements detected for package BioSequences

#41 egoecho closed 3 years ago
2
Position of unmapped mate

#40 CiaranOMara opened 3 years ago
0
can you add some functions to BAM.Reader?

#39 panxiaoguang closed 2 years ago
2
CompatHelper: bump compat for "Indexes" to "0.2"

#38 github-actions[bot] opened 3 years ago
0
CompatHelper: bump compat for "Indexes" to "0.2"

#37 github-actions[bot] closed 3 years ago
1
TagBot trigger issue

#36 JuliaTagBot closed 3 years ago
5
Constrain automa upper bound

#35 kescobo closed 3 years ago
1
Broken with Automa 0.8.1

#34 dialvarezs closed 3 years ago
5
Browsing the documentation

#33 george-githinji closed 3 years ago
1
Switch to CodecBGZF

#32 jakobnissen closed 3 years ago
0
eachoverlap running past end of stream

#47 rulixxx opened 3 years ago
0
BoundsError in eachoverlap()

#31 yuifu closed 2 years ago
14
Migrate from BGZFStreams to CodecBGZF

#30 jakobnissen opened 4 years ago
2
Begin crosschecks

#29 CiaranOMara closed 3 years ago
0
Rehaul BAM and SAM accessor functions

#28 jakobnissen opened 4 years ago
6
Amend field access errors

#27 jakobnissen closed 2 years ago
2
Make BAM record layout match BAM specs

#26 jakobnissen closed 4 years ago
0