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BioKIC / NEON-Biorepository

Development base for the NEON Biorepository Data Portal host by BioKIC - Arizona State University (https://biorepo.neonscience.org)
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Programmatically link occurrence relationships eg. DNA and voucher specimens #331

Closed mandrewj closed 2 months ago

mandrewj commented 2 years ago

Many DNA extracts are derived from vouchers where we also get that physical specimen voucher at the biorepository.

At least for the carabid beetles, most (and nearly all future) DNA extracts in https://biorepo.neonscience.org/portal/collections/misc/collprofiles.php?collid=63 can be linked by having the same NEON sampleID as a pinned voucher in https://biorepo.neonscience.org/portal/collections/misc/collprofiles.php?collid=39

These should all have 'associated occurence' relationships generated between the pairs using the relationship 'originatingSampleOf / subsampleOf' between them.

The mosquitoes should similar be done for collections https://biorepo.neonscience.org/portal/collections/misc/collprofiles.php?collid=65 and https://biorepo.neonscience.org/portal/collections/misc/collprofiles.php?collid=29

I believe this can and should also be done for DNA extractions of fish and maybe some mammals (though that might be more complex due to multiple tissue sample types)

kyule commented 2 years ago

Part of a larger need to define all of the occurrence relationships between collections that should be implemented in the portal. For the time being these will have to be input manually and through the backend, as there currently is no way to batch upload relationships (to my knowledge) and we are not looking for the relationships during harvesting. Step one: Kelsey will outline all the desired relationships.

kyule commented 2 months ago

Broken down and better outlined in some issues from 552 - 556 especially #554