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BioLockJ-Dev-Team / sheepdog_testing_suite

Test suite for BioLockJ development team.
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demux should check its dependencies better #104

Open IvoryC opened 5 years ago

IvoryC commented 5 years ago

demultiplexer failed silently at execution time when no barcodes were supplied.

IvoryC commented 4 years ago

When creating tests for the demultiplexer, or doing anything with it, this info may be useful: https://forum.qiime2.org/t/importing-and-demultiplexing-sequence-data-quick-reference/14002 https://docs.qiime2.org/2020.2/tutorials/overview/#demultiplexing

IvoryC commented 4 years ago

The demultiplexer has a default system that it uses for detecting barcodes. If no barcodes are explicitly supplied it uses this default system. So really, we need some added checks on when it can use the default system, and some checks on the default system itself. Thus... its not a fast-fix.

IvoryC commented 4 years ago

I need to find some test files for this. So I'm moving this out of the January milestone until it has higher demand... and/or test files.