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BioMedIA
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deepali
Image, point set, and surface registration in PyTorch.
https://biomedia.github.io/deepali/
Apache License 2.0
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[docs] Use Zenodo DOI which always references the latest version
#97
aschuh-hf
closed
1 year ago
0
[docs] Add nibabel to list of optional dependencies
#96
aschuh-hf
closed
1 year ago
0
[docs] Add Zenodo DOI for release version 0.4.0
#95
aschuh-hf
closed
1 year ago
0
[docs] Add 'abstract' to CITATION.cff
#94
aschuh-hf
closed
1 year ago
0
[docs] Add citation metadata
#93
aschuh-hf
closed
1 year ago
0
Refactor and update core, integrating utils.cli, support nibabel and S3 URIs
#92
aschuh-hf
closed
1 year ago
0
Demo basic use of deepali.spatial for learning image registration
#91
aschuh-hf
opened
1 year ago
0
[build] Use nvidia/cuda 11.8 Docker image as default BASE_IMAGE
#90
aschuh-hf
closed
1 year ago
0
[spatial] Fix ImageTransformer 'target' argument docstring
#89
aschuh-hf
closed
1 year ago
0
Reading file problem when running registration in parallel
#88
MengyunQ
closed
1 year ago
6
[Feature]: Support PaddingMode NONE in 3D
#87
vasl12
closed
1 year ago
9
[docs] Fix tutorial notebook run in Colab with GPU
#86
aschuh-hf
closed
1 year ago
0
[spatial] Move transformer buffers to transform.device on init
#85
aschuh-hf
closed
1 year ago
0
[docs] Run tutorial notebook in Colab
#84
aschuh-hf
closed
1 year ago
0
[docs] Add diffeomorphic registration example
#83
aschuh-hf
closed
1 year ago
0
[core] Fix cshape_image() when radius=None
#82
aschuh-hf
closed
1 year ago
0
[docs] Add intro to pairwise image registration tutorial
#81
aschuh-hf
closed
1 year ago
0
[build] Install libGL required by VTK in Docker image
#80
aschuh-hf
closed
1 year ago
0
[build] Add torchvision to conda env
#79
aschuh-hf
closed
1 year ago
0
[doc] Add README link to PyPI project
#78
aschuh-hf
closed
1 year ago
0
[data] Fix ImageBatch and FlowFields __getitem__()
#77
aschuh-hf
closed
1 year ago
0
[build] Use Ubuntu 22.04 as base Docker image and install Mambaforge
#76
aschuh-hf
closed
1 year ago
0
[ide] Add Jupyter to recommended VS Code extensions
#75
aschuh-hf
closed
1 year ago
0
[utils] Update utilities for working with URIs
#74
aschuh-hf
closed
1 year ago
0
[conda] Generate conda 'env' files for use in CI/CD jobs
#73
aschuh-hf
closed
1 year ago
0
[docs] Add Read the Docs configuration file
#72
aschuh-hf
closed
1 year ago
1
[ci] Upload to Test PyPI first
#71
aschuh-hf
closed
1 year ago
0
[build] Fix Development Status classifier
#70
aschuh-hf
closed
1 year ago
0
[build] State supported Python versions explicitly
#69
aschuh-hf
closed
1 year ago
0
[enh] ImageBatch.__getitem__() and FlowFields.__getitem__() slicing
#68
aschuh-hf
closed
1 year ago
0
[fix] Missing SpatialTransformer.update() and wrong type annotations
#67
aschuh-hf
closed
1 year ago
0
[ci] Rename GitHub Workflows to change labels in README
#66
aschuh-hf
closed
1 year ago
0
[ci] Add GitHub Workflow to run tests and fix tests
#65
aschuh-hf
closed
1 year ago
0
[enh] Add SpatialTransformer base class; SpatialTransform.register_update_hook and remove_update_hook()
#64
aschuh-hf
closed
1 year ago
0
[docs] Fix cross-link to PointSetTransformer class
#63
aschuh-hf
closed
1 year ago
0
[enh] Add SpatialTransform.points() and PointSetTransformer module
#62
aschuh-hf
closed
1 year ago
0
[build] Change PyPI project name to hf-deepali
#61
aschuh-hf
closed
1 year ago
0
fix: NormalizedPairwiseImageLoss.extra_repr()
#60
aschuh-hf
closed
1 year ago
0
fix: Preserve 'axes' attribute of FlowField / FlowFields
#59
aschuh-hf
closed
1 year ago
0
dist: Exclude non-package sources from distribution
#58
schuhschuh
closed
1 year ago
0
Switch to pyproject.toml and remove setup.py; add GitHub Action to publish to PyPI
#57
schuhschuh
closed
1 year ago
0
[docs] Set up Jupyter book with GitHub Pages
#56
schuhschuh
closed
1 year ago
0
citation
#55
annareithmeir
closed
1 year ago
1
`NormalizedPairwiseImageLoss.extra_repr()` throws TypeError when `norm=None`
#54
qiuhuaqi
closed
1 year ago
0
Add PointTransformer which maps points from any coordinate system to another
#53
schuhschuh
closed
1 year ago
0
SpatialTransform with respect to different coordinate systems (Axes)
#52
schuhschuh
opened
1 year ago
2
fix: Negative distance_matrix() entries when using torch.float32
#51
aschuh-hf
closed
1 year ago
0
FlowField.detach() does not preserve Axes attribute
#50
aschuh-hf
closed
1 year ago
0
tmp fix of center_crop
#49
ybai-hf
closed
1 year ago
0
fix: Image.narrow() function
#48
aschuh-hf
closed
1 year ago
0
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