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BioMedIA / dhcp-structural-pipeline

structural analysis of neonatal brain MRI scans
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setup.sh Failure #24

Open EmilioIppoliti opened 2 years ago

EmilioIppoliti commented 2 years ago

I 'm tryng to set up the dhcp pipeline but i have a configuration problem about the installation as cited above : make /usr/src/structural-pipeline -DMIRTK_DIR=/usr/src/structural-pipeline/build/MIRTK/build/lib/cmake/mirtk -DVTK_DIR=/usr/src/structural-pipeline/build/VTK/build -DITK_DIR=/usr/src/structural-pipeline/build/ITK/build -DCMAKE_CXX_COMPILER=/usr/bin/g++-5 -DCMAKE_C_COMPILER=/usr/bin/gcc-5 : command failed, see log file: /usr/src/structural-pipeline/setup.log

could you help me ?

Thank you in Advance

ingmargithub commented 1 year ago

I've been having similar issues. You have to check the setup.log file text to see what the exact error was, though this can be hard to decypher. In your case I think you don't have g++5 and gcc-5 installed in your linux distro or virtual machine. If you use the FSL default VM, this is likely the case (it comes with g++ 4.8.5 standard and it is difficult to change this, I have not succeeded in doing so, also not with the Redhat fix listed on the README of this github).

I know this issue is a year old, but have you fixed your issues with this? If so, I'd love to know how. From another comment I saw, the authors are too busy to help with problems such as these.