Adaptation of DomHMM to General Simulations

[yusuferentunc]

• [x] Making DomHMM more deterministic
• [x] Testing with several different simulations and correcting errors
• [x] Testing with asymmetric membrane simulations
• [x] Testing with transmembrane domain protein inclusion
• [x] Testing simulations with different residue orders
• [x] Testing with atomistic simulations

[yusuferentunc]

• Number of clusters are lower in example PUPC:POPC:CHOL with comparing correspond result image at book chapter

[yusuferentunc]

• Tests with atomistic simulation of PSM:POPC:CHL1 with 100 frame and 2000 frame is done. Relatively, results seems acceptable
• Bug on leaflet assignment fixed by ec9ae69