search

BioOmics / iSeq

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
https://anaconda.org/bioconda/iseq
MIT License
126 stars 9 forks source link

How to download genome sequences(and gtf/gff) file? #1

Closed xiekunwhy closed 5 months ago

xiekunwhy commented 5 months ago

Hi,

How to download genome sequences(and gtf/gff) file using iseq, for example, if I want to download GCF_023101765.2, iseq -i GCF_023101765.2 not works.

Best, Kun

BioOmics commented 5 months ago

Hi, @xiekunwhy

Thank you for using iSeq. I'm sorry, iSeq is currently mainly used to obtain high-throughput sequencing raw data from databases such as GSA, SRA, ENA, etc., rather than for obtaining genomic sequence data.

To help you fetch the data, you can click on this link to view genomic information on NCBI GENOME database, or click here to download directly.

Best