BioSIM-Research-Group / molUP

molUP is a VMD extension that provides a simple manner for loading and saving Gaussian files, and analyze related results.
https://biosim.pt/molup/
MIT License
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Cannot open G09 log file in version 1.6.6 #5

Closed jalemkul closed 3 years ago

jalemkul commented 3 years ago

Hi, Thanks for your help with the previous sed issues, but unfortunately I'm having similar problems with the latest version of molUP. While I can open a G09 output file (geometry optimization and frequency calculation), any attempt to animate the frequencies leads to an error (below). This problem is the same on Ubuntu 16.04 and MacOS Catalina, so I do not think it is platform-specific (my Mac has gsed and ggrep, which the documentation says should work and solved my previous issue).

A simple test case (water) is attached. The file loads but frequencies will not animate. The error message is quoted below

invalid bareword "sed"
in expression "sed: -1";
should be "$sed" or "{sed}" or "sed(...)" or ...
invalid bareword "sed"
in expression "sed: -1";
should be "$sed" or "{sed}" or "sed(...)" or ...
    (parsing expression "sed: -1")
    invoked from within
"expr [lindex $freq 0] -1 "
    (procedure "molUP::animateFreq" line 19)
    invoked from within
"molUP::animateFreq $molUP::freqVectorsList $molUP::animationFreq $molUP::displacement "none""
    (procedure "molUP::selectFreq" line 22)
    invoked from within
"molUP::selectFreq"
    (command bound to event)

water_opt_freq_mp2.log

henriquefer commented 3 years ago

Hello, You are welcome. I am sorry for the issue you are experiencing. I have check the code, and it was an issue that prevents the animation of frequencies in some cases. I have fix that issue and released a new version (v1.6.7). Please, update your molUP version and let me know if it fixes the problem.

Thank you

jalemkul commented 3 years ago

Problem solved, thank you for the quick fix!