Model integration

[cruz-f]

Integration of multi-scale modeling

New features:

• Model, MetabolicModel, RegulatoryModel, and dynamic type Model;
• Variable, Reaction, Interaction, among others, and dynamic type Variable;
• Linear Problems based on mew solvers;
• Metabolic, regulatory, and integrated Analysis using several simulation methods (FBA, pFBA, FVA, rFBA, SRFBA, etc);
• I/O support for standard files (XML, SBML, CSV, JSON, etc);
• Object manipulation workflows including APIs for operations, such as add, remove, update, undo, redo, contexts, among others;
• Algebra for high-level object-based programming of logic and math algebra