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BioSystemsUM / cobamp

Constraint-based modeling framework for the enumeration of pathway analysis concepts
http://cobamp.readthedocs.io
GNU General Public License v3.0
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Flexible steady-state relaxation definitions for IrreversibleLinearSystem #15

Closed vvvieira closed 4 years ago

vvvieira commented 4 years ago

The IrreversibleLinearSystem class has constructor arguments for some metabolite constraint relaxations, but this should be a lot more flexible. Right now, there are 3 predefined parameters (non_consumed, produced, consumed).

This kind of additional constraints should be passed as a dictionary of metabolite indices mapped to ranges (pairs of floats).