BioSystemsUM / troppo

Reconstruction algorithms for Python
GNU General Public License v3.0
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Refactor OmicsContainer and OmicsDataMap classes to allow multi-sample preprocessing #5

Open vvvieira opened 4 years ago

vvvieira commented 4 years ago

This paper describes a very straightforward framework for gene/reaction-level omics integration. The current wrappers are only good for generic pipelines where the sample is already preprocessed before calling reconstruction methods.

To this end, OmicsContainer and IntegrationStrategy classes should be changed to accommodate the following parameters described in the paper:

vvvieira commented 4 years ago

Addressed partially on #7 .