A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
[x] Are at least two SARS-CoV-2 genomes from this case series publicly available?
[x] Is there a time period of at least 28 days between the first genome in the series and the last?
[x] Is there sufficient public clinical evidence that the patient possessed a suppressed immune system during the time period covered by these genomes?
[x] Is there sufficient evidence that these genomes are obtained by sampling the same patient?
[x] Is the first genome within the case series sufficiently high (>= 95% coverage overall, 100% in spike gene) quality? Later genomes can be of lower quality but the "day 0" genome is treated as a baseline.
Information on case series
| Accession | Day / Date | Coverage % | DOI |
| "The generated full-genome sequences are available at
Genome Sequence Archive as.bam files under the Submission ID subCRA009527,
Accession numbers CRR453213 (day 73), CRR453214 (day 93), CRR453215 (day
117), CRR4536216 (day 123), CRR453217 (day 129), CRR453218 (day 136),
CRR453219 (day 143), CRR453220 (day 158), CRR453221 (day 164), CRR453222
(day 171), CRR453223 (day 182).)" DOI: https://doi.org/10.1038/s41467-022-30163-4
A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
Information on case series
| Accession | Day / Date | Coverage % | DOI | | "The generated full-genome sequences are available at Genome Sequence Archive as.bam files under the Submission ID subCRA009527, Accession numbers CRR453213 (day 73), CRR453214 (day 93), CRR453215 (day 117), CRR4536216 (day 123), CRR453217 (day 129), CRR453218 (day 136), CRR453219 (day 143), CRR453220 (day 158), CRR453221 (day 164), CRR453222 (day 171), CRR453223 (day 182).)" DOI: https://doi.org/10.1038/s41467-022-30163-4