A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
[X] Are at least two SARS-CoV-2 genomes from this case series publicly available?
[X] Is there a time period of at least 28 days between the first genome in the series and the last?
[X] Is there sufficient public clinical evidence that the patient possessed a suppressed immune system during the time period covered by these genomes?
[X] Is there sufficient evidence that these genomes are obtained by sampling the same patient?
[X] Is the first genome within the case series sufficiently high (>= 95% coverage overall, 100% in spike gene) quality? Later genomes can be of lower quality but the "day 0" genome is treated as a baseline.
A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
Information on case series
| Accession | Day / Date | Coverage % | DOI | GanBank Accession Numbers| patient followed for 292 days, whole genome sequencing, DOI: https://doi.org/10.1038/s41467-022-29104-y OL307721 OL307722 OL307723 OL307724 OL307725 OL307726 OL307727 OL307728 OL307729 OL307720 OL307730 OL307731 OL307732 OL307733 OL307734 OL307735 OL307736 OL307737 OL307738 OL307739 OL307740 OL307741 OL307742 OL307743 OL307744 OL307745 OL307746