A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
[x ] Are at least two SARS-CoV-2 genomes from this case series publicly available?
[x ] Is there a time period of at least 28 days between the first genome in the series and the last?
[x ] Is there sufficient public clinical evidence that the patient possessed a suppressed immune system during the time period covered by these genomes?
[ x] Is there sufficient evidence that these genomes are obtained by sampling the same patient?
[x ] Is the first genome within the case series sufficiently high (>= 95% coverage overall, 100% in spike gene) quality? Later genomes can be of lower quality but the "day 0" genome is treated as a baseline.
Information on case series
Accession
Day / Date
Coverage %
DOI
EPI_ISL_2397308
06/10/2020
Stretches of NNNs (1.19% of overall sequence).
doi: 10.1016/j.chom.2022.01.005
EPI_ISL_2397309
14/01/2021
Long stretches of NNNs (29.43% of overall sequence). Gap of 3 nucleotides when compared to the reference WIV04 sequence. NSP11 without BLAST coverage.
doi: 10.1016/j.chom.2022.01.005
EPI_ISL_2397310
20/10/2020
Stretches of NNNs (2.41% of overall sequence).
doi: 10.1016/j.chom.2022.01.005
EPI_ISL_2397311
30/11/2020
Stretches of NNNs (3.24% of overall sequence). Gap of 3 nucleotides when compared to the reference WIV04 sequence.
doi: 10.1016/j.chom.2022.01.005
EPI_ISL_2397312
10/12/2020
Stretches of NNNs (1.38% of overall sequence). Gap of 12 nucleotides when compared to the reference WIV04 sequence.
doi: 10.1016/j.chom.2022.01.005
EPI_ISL_2397313
13/04/2021
Long stretches of NNNs (7.33% of overall sequence). Gap of 12 nucleotides when compared to the reference WIV04 sequence.
A case series will only be included if it fits the inclusion criteria specified in the original paper. As well as the inclusion criteria specified within the paper only public sequences with available accessions will be included in this repository via this route.
Please confirm that each of the below criteria is met by the case series('s) suggested for inclusion:
Information on case series