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BiocPy
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cellarr
Store collections of experimental data based on TileDB
https://biocpy.github.io/cellarr/
MIT License
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dataloader refactor
#40
tony-kuo
opened
1 month ago
0
Managing sample metadata
#39
jkanche
opened
1 month ago
0
exploring tiledb's dataloaders
#38
jkanche
opened
1 month ago
1
Importers for combining irregular shaped dataframes into tiledb
#37
jkanche
opened
2 months ago
0
Autoencoder
#36
tony-kuo
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#35
pre-commit-ci[bot]
opened
2 months ago
0
Fix typo in figure
#34
jkanche
closed
2 months ago
0
Allow choosing nan string
#33
tony-kuo
closed
2 months ago
0
update illustrative figure
#32
jkanche
closed
2 months ago
0
Add importers for `SummarizedExperiment`
#31
jkanche
opened
2 months ago
0
add SE-inspired figure
#30
jkanche
closed
2 months ago
0
improve `train_dataloader()` and initializing `DataModule`
#29
jkanche
opened
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#28
pre-commit-ci[bot]
closed
2 months ago
0
QOL improvements to the realized slices.
#27
jkanche
closed
2 months ago
0
Add `verbose` mode to log whats happening during the build process
#26
jkanche
opened
2 months ago
0
Add `__repr__` and `__str__` to `CellArrDatasetSlice`
#25
jkanche
closed
2 months ago
1
Add cell index
#24
jkanche
closed
2 months ago
0
Cell matrix shape with nonempty_domain
#23
tony-kuo
closed
2 months ago
0
Add usage section in documentation
#22
jkanche
closed
2 months ago
0
Refactor to be more explicit in naming arguments
#21
jkanche
closed
2 months ago
0
Docs for dataloader
#20
tony-kuo
closed
2 months ago
0
Dataloader
#19
tony-kuo
closed
2 months ago
0
Add index in file for each row in `cell_metadata`
#18
jkanche
closed
2 months ago
0
Open H5AD datasets in read mode
#17
jkanche
closed
2 months ago
0
Fix a bug deciding on the shape of the final object
#16
jkanche
closed
2 months ago
0
use dataclass to represent `CellArrDatasetSlice`
#15
jkanche
closed
2 months ago
0
Sync docs and README
#14
jkanche
closed
2 months ago
0
Option to specify column types for metadata objects
#13
jkanche
closed
2 months ago
0
Minor enhancements
#12
jkanche
closed
2 months ago
0
Fix pretty print of class
#11
jkanche
closed
2 months ago
0
Update documentation and tutorial
#10
jkanche
closed
2 months ago
0
adding tests for anndata utils
#9
jkanche
closed
2 months ago
0
Provide options for column types in cell and gene annotation dataframes/csv
#8
jkanche
closed
2 months ago
0
consolidate duplicate symbols when remapping counts
#7
jkanche
closed
3 months ago
0
Add cell counts to sample metadata
#6
jkanche
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#5
pre-commit-ci[bot]
closed
3 months ago
0
rename build module
#4
jkanche
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#3
pre-commit-ci[bot]
closed
3 months ago
0
Fix documentation
#2
jkanche
closed
3 months ago
0
Build TileDB from AnnData
#1
jkanche
closed
3 months ago
0