Closed vjcitn closed 3 weeks ago
This is an issue with the sqlite3
library shipped by default, it needs an update. I do this on gothub actions as well, for ref: https://github.com/BiocPy/scrnaseq/blob/master/.github/workflows/pypi-publish.yml#L28
In all likelihood this issue can be closed, but I can tell you that working within a container using python 3.10 I have gotten nowhere, with the new sqlite installation noted in the action, same error. I see that the action uses python 3.9 -- is this essential?
works fine on mac with python 3.12 ... debian/ubuntu snafu. sorry for the noise.
The test action runs on multiple python versions from 3.9-3.12 - https://github.com/BiocPy/scrnaseq/actions/runs/10998486432.
I ran into this only on linux, not on macos, and updating sqlite3 has resolved this.
oops, i guess we posted at the same time. all good.
Python 3.10.12 (main, Sep 11 2024, 15:47:36) [GCC 11.4.0] on linux Type "help", "copyright", "credits" or "license" for more information.