Fail to libaray the built package using makeOrgPackage

[hcph]

Get the warinning： cannot remove file './org.Twheat.eg.sqlite', reason 'Permission denied'. Beg you help. Here is the parameter I used: makeOrgPackage(gene_info=wSym, chromosome=wChr, go=wGO, version="1.1", maintainer="Some One hechao7021@someplace.org", author="Some One hechao7021@someplace.org", outputDir = ".", tax_id="4565", genus="Taeniopygia", species="wheat", goTable="go")

here is the output:

Populating genes table: genes table filled Populating gene_info table: gene_info table filled Populating chromosome table: chromosome table filled Populating go table: go table filled table metadata filled 'select()' returned many:1 mapping between keys and columns Dropping GO IDs that are too new for the current GO.db Populating go table: go table filled Populating go_bp table: go_bp table filled Populating go_cc table: go_cc table filled Populating go_mf table: go_mf table filled 'select()' returned many:1 mapping between keys and columns Populating go_bp_all table: go_bp_all table filled Populating go_cc_all table: go_cc_all table filled Populating go_mf_all table: go_mf_all table filled Populating go_all table: go_all table filled Creating package in ./org.Twheat.eg.db Now deleting temporary database file [1] "./org.Twheat.eg.db" Warning messages: 1: call dbDisconnect() when finished working with a connection 2: In file.remove(dbFileName) : cannot remove file './org.Twheat.eg.sqlite', reason 'Permission denied'

[lshep]

Did the package get built in your working directory?

[fish2022Jul]

I encountered the same problem. Any suggestion for it?

[fish2022Jul]

I got this error on Windows 11, R 4.2.1 (Rstudio) with AnnotationDbi 1.58. But when I switch to R 4.2.2 on Redhat7 AnnotationDbi 1.60. the error disperared. When I'm try to load the package to R 4.2.1, the system said I must have AnnotationDbi_1.60 installed.....So I updated it and load the generated library successfully.

[lshep]

Thank you for providing that additional information. So it seems like it may have been resolved in a later version of AnnotationDbi