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Bioconductor / AnnotationForge

Tools for building SQLite-based annotation data packages
https://bioconductor.org/packages/AnnotationForge
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.get_file() helper in MakingNewAnnotationPackages.Rnw not working #32

Closed hpages closed 2 years ago

hpages commented 2 years ago

This code in the MakingNewAnnotationPackages.Rnw vignette doesn't seem to work properly anymore in BioC 3.15. In release, uquery actually looks like the path to a local file, but in devel it looks something like this:

> uquery
[1] "de8e479a7fb8c_%3Fquery%3DP13368%2Bor%2BQ6GZX4%26format%3Dtab"

This breaks AnnotationForge: https://bioconductor.org/checkResults/3.15/bioc-LATEST/AnnotationForge/

@LiNk-NY Do you think you can take a look at it?

Thanks, H.

LiNk-NY commented 2 years ago

Fixed in 852ed89abd06b6b1eb5414288ebe42959b00b421

hpages commented 2 years ago

AnnotationForge back to green on 3.15 daily report. Thanks @LiNk-NY !