Bioconductor / AnnotationForge

Tools for building SQLite-based annotation data packages
https://bioconductor.org/packages/AnnotationForge
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Why are all the calls to Ensembl set to version 80? #44

Closed knokknok closed 1 year ago

knokknok commented 1 year ago

Could it be made an option propagated from makeOrgPackageFromNCBI?

lshep commented 1 year ago

Where are you referring? In other code, in examples, from other functions, a vignette?

for makeOrgPackageFromNCBI man function default/man page, likely that was the release at the time of creation of the package.

knokknok commented 1 year ago

At least there: getFastaSpeciesDirs .getEnsemblData