Closed felixlaguna closed 4 years ago
Apologies for the delay.
First off, I'm not sure sure what the values of fSym
, fChar
, and fGO
are in your example. I am assuming these values are from the MakingNewOrganismPackages
vignette, however, these tables are for the zebra finch and not applicable to building a yeast orgdb package so the resulting package is not going to be useful.
You are right in pointing out that the user-generate orgdb packages do not include the go_cc
table (among other go_
tables it was missing). We found that the org.Sc.sgd.db
that we maintain does contain these tables, so one option may be to use this package instead of generating a new one.
We have pushed changes to the master (devel) branch of AnnotationForge that will create the needed go_
tables in user generated orgdb packages, so the package you build should now work with topGO.
When creating an annotation database like in the vignette:
The package is generated, it is imported without a problem, but then it fails to be used with topGO, with the error of "missing table: go_cc":