Open isilta opened 12 months ago
Thanks for the PR.
Note that starting with BioC 3.17, we're moving away from seed files and BSgenome::forgeBSgenomeDataPkg(). The new recommended way to forge a BSgenome data package is by using the BSgenomeForge package:
BSgenome::forgeBSgenomeDataPkg()
library(BSgenomeForge) forgeBSgenomeDataPkgFromUCSC(genome="canFam4", organism="Canis lupus familiaris", pkg_maintainer="Jane Doe <janedoe@gmail.com>") # trying URL 'http://hgdownload.cse.ucsc.edu/goldenPath/canFam4/bigZips/canFam4.2bit' # Content type 'unknown' length 651703337 bytes (621.5 MB) # ================================================== # downloaded 621.5 MB # # Creating package in ./BSgenome.Cfamiliaris.UCSC.canFam4
See ?forgeBSgenomeDataPkgFromUCSC for more information.
?forgeBSgenomeDataPkgFromUCSC
Cheers, H.
Thanks for the PR.
Note that starting with BioC 3.17, we're moving away from seed files and
BSgenome::forgeBSgenomeDataPkg()
. The new recommended way to forge a BSgenome data package is by using the BSgenomeForge package:See
?forgeBSgenomeDataPkgFromUCSC
for more information.Cheers, H.